View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_18 (Length: 486)
Name: NF2662_low_18
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Complemental strand, 34608064 - 34607603
Alignment:
| Q |
8 |
agaaaatcaaagaaccaaaaatgaaagtgagtagtcatcatcttatatagcgacgtggctaccttgcaacatttcaaaaaccaggtgtcctacttccacc |
107 |
Q |
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| T |
34608064 |
agaaaatcaaagaaccaaaaatgaaagtgagtagtcatcatcttatataacgacgtggctaccttgcaacatttcacaaaccaggtgtcctacttccacc |
34607965 |
T |
|
| Q |
108 |
tatagcttcgatcaattcaacctctatttggctcatataatgcaacaccctacacttttcatccatgcaaaattgcc-----aatctaataaagtctaat |
202 |
Q |
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| T |
34607964 |
tatagcttcgatcaattcaacctctatttggctcatataatgcaacaccctacacttttcatccatgcaaaattgccaatataatctaatcaagtctaat |
34607865 |
T |
|
| Q |
203 |
aaactttgcatcattcattcatagtcacattaaattagttg---tgttgttgaatattctggatcccggtctcaaaaacctaaaagagagtgtctttgac |
299 |
Q |
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| T |
34607864 |
aaacttttcatcattcattcatagtcacattaaattagttgtgttgttgttgaatattctggatcccggtctcaaacatctaaaaga----------gac |
34607775 |
T |
|
| Q |
300 |
tataattaaatctttcaatggcaactagaagatatgcatttggaaggatggatgaggcaaatcatccagattccataagagcaaccgtagctgaattttt |
399 |
Q |
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| T |
34607774 |
tataattaaatctttcaatggcaactagaagatatgcatttggaaggatggatgaggcaaatcatccagattccataagagcaaccgtagctgaattttt |
34607675 |
T |
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| Q |
400 |
ctcaacttgcatctttgtctttgctggagaaggctcagcccttgctctaagttcgtatatatagtaccatat |
471 |
Q |
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| T |
34607674 |
ctcaacttgcatctttgtatttgctggagaaggctcagcccttgctctaagttcgtatatatagtaccatat |
34607603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 445
Target Start/End: Original strand, 24832381 - 24832494
Alignment:
| Q |
332 |
tatgcatttggaaggatggatgaggcaaatcatccagattccataagagcaaccgtagctgaatttttctcaacttgcatctttgtctttgctggagaag |
431 |
Q |
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||||| ||||||||| | |||||||| | ||||||||||| || ||||| ||| ||||||||||| || |||| ||||||||||||||||||||||| |
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| T |
24832381 |
tatgcttttggaagggttgatgaggcttaccatccagattctattagagctaccatagctgaatttgcttccactttcatctttgtctttgctggagaag |
24832480 |
T |
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| Q |
432 |
gctcagcccttgct |
445 |
Q |
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| T |
24832481 |
gctctggccttgct |
24832494 |
T |
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