View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_2 (Length: 832)
Name: NF2662_low_2
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 789; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 1 - 817
Target Start/End: Original strand, 29335122 - 29335938
Alignment:
| Q |
1 |
accgatagatccttgtttgaatcttacattgctttttatctcaggactaggccttattgttggcggcgaaaaaccatggtgtagtgaagagtgtgtcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335122 |
accgatagatccttgtttgaatcttacattgctttttatctcaggactaggccttattgttggcggcgaaaaaccatggtgtagtgaagagtgtgtcttt |
29335221 |
T |
|
| Q |
101 |
atacctaatgccctgaaagaaccattgagaggcagagatgcaagacatgcatacctctcagtgaatagtccaattcgcatagctcgctttgctaatgttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335222 |
atacctaatgccctgaaagaaccattgagaggcagagatgcaagacatgcatacctctcagtgaatagtccaattcgcatagctcgctttgctaatgttc |
29335321 |
T |
|
| Q |
201 |
tttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatttgcgccgacagtaattgcaagagaaaactctttggatggtacgttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29335322 |
tttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatttgcgccgacagtaattgcaagagaaaactctttggatggtaagttc |
29335421 |
T |
|
| Q |
301 |
attgctgctctcgctggtgcttgagaatgagattcctgttgaatctcgagcaaccaagtcattgttgttgaaattgagtgttaagtccagtgagatggaa |
400 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335422 |
attgctgctctcactggtgcttgagaatgagattcctgttgaatctcgaacaaccaagtcattgttgttgaaattgagtgttaagtccagtgagatggaa |
29335521 |
T |
|
| Q |
401 |
tctgaattggaaaggctgttactataggaacctggagaggtttcaatttggtgggtggatatagtggaagcaacatggctactaacatcagattcatatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335522 |
tctgaattggaaaggctgttactataggaacctgtagaggtttcaatttggtgggtggatatagtggaagcaacatggctactaacatcagattcatatt |
29335621 |
T |
|
| Q |
501 |
cttctgtggcctctacttcaagatcaaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29335622 |
cttctgtggcctctacttcaagatcaaaaattggtttcatgattaattaaagctaattcactaaatatgtccagcagtgaaaaagatgcttggttctgca |
29335721 |
T |
|
| Q |
601 |
atgaaaatccatcagtttatagtcagtaagtatgaaaacatgagaagaaactcttaggatagcaaatatggttttaaagtaaacttgtgattcaagggct |
700 |
Q |
| |
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| T |
29335722 |
atgaaaatccatcagtttatagtcagtaagtatgaaaacaagagaagaaactcttagaatagcaaatatggttttaaagtaaacttgtgattcaagggct |
29335821 |
T |
|
| Q |
701 |
tgataattgaactttttgttgcaaaatcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcctatagcc |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29335822 |
tgataattgaactttttgttgcaaaatcctttgtactagttttgttcttgatttaaatggaatcttgcaatatagatctattaaataaaatcatatagcc |
29335921 |
T |
|
| Q |
801 |
tctcttaatattcattt |
817 |
Q |
| |
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||||||||||||||||| |
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| T |
29335922 |
tctcttaatattcattt |
29335938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 49 - 286
Target Start/End: Original strand, 33032407 - 33032647
Alignment:
| Q |
49 |
aggccttattgttggcggcgaaaaaccatggtgtagtgaagagtgtgtctttatacctaatgccctgaaagaaccattgagaggcagagatgcaagacat |
148 |
Q |
| |
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|||||| ||||||| || || ||||||| ||| | ||||||||||| ||||| ||||||| ||| |||||||||| | ||| | |||||| | || |
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| T |
33032407 |
aggcctaattgttgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaacta |
33032506 |
T |
|
| Q |
149 |
gcat---acctctcagtgaatagtccaattcgcatagctcgctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagc |
245 |
Q |
| |
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|||| |||| |||| || | ||| |||| |||||||| |||||||||||||||||||| || ||||||||||| || |||||||| || ||||| | |
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| T |
33032507 |
gcattatacctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaac |
33032606 |
T |
|
| Q |
246 |
tgtaaaatttgcgccgacagtaattgcaagagaaaactctt |
286 |
Q |
| |
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|| |||| || | | ||||||||||||| |||||||||||| |
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| T |
33032607 |
tgaaaaactttctctgacagtaattgcatgagaaaactctt |
33032647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 45217873 - 45217916
Alignment:
| Q |
197 |
gttctttctctcttgtgtgcattttgatgaccaccaagtgcctg |
240 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
45217873 |
gttctttctcttttgtgtgcattttggtgtccaccaagtgcctg |
45217916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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