View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_25 (Length: 432)
Name: NF2662_low_25
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 45279480 - 45279078
Alignment:
| Q |
18 |
cctatgaaatgcctcgtgaagctgttaaggtggaagattattgattctaatgaatataggtcatagctttattattcattaattcaatttgtgtgtg--a |
115 |
Q |
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| T |
45279480 |
cctatgaaatgcctcgtgaagctgttaaggtggaagattattgattctaatgaatataggtcatagctttattattcattaattcaatttgtgtgtgtga |
45279381 |
T |
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| Q |
116 |
ctttagaggtgtgaagctatgatgatagtatagttgaaaaatatgtacatgttacattgtgaccggttgttaagaagtgcattctgtgtttgcaagttca |
215 |
Q |
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| T |
45279380 |
ctttagaggtgtgaagctatgatgatagtatagttgaaaaatatgtacatgttacattgtgaccggttgttaagaagtgcagtctgtgtttgcaagttta |
45279281 |
T |
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| Q |
216 |
atgttgtttcaggatttattattgtgttagctctaattatactttaagccaattcttcttctatgatgattatgcattttgtagatgacagcaacaagaa |
315 |
Q |
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| T |
45279280 |
atgttgtttcaggatttattattgtgttagctctaattatactttaagccaattcttcttctatgatgattatgcattttgtagatgacagcaaccagaa |
45279181 |
T |
|
| Q |
316 |
taaccaataagcttcacaataggaacttttttggtcaaacaacaaacagaagtcacttccatgttttgtggnnnnnnnnncttttcctgttaacattact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45279180 |
taaccaataagcttcacaataggaacttttttggtcaaacaacaaacagaagtcacttccatgttttgtggtttttt----ttttcctgttaacattact |
45279085 |
T |
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| Q |
416 |
ccctttg |
422 |
Q |
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| T |
45279084 |
ccctttg |
45279078 |
T |
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