View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_27 (Length: 401)
Name: NF2662_low_27
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 4243781 - 4244144
Alignment:
| Q |
20 |
gtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243781 |
gtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacat |
4243880 |
T |
|
| Q |
120 |
gatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243881 |
gatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaac |
4243980 |
T |
|
| Q |
220 |
aacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243981 |
aacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatca |
4244080 |
T |
|
| Q |
320 |
aattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaa |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244081 |
aattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaa |
4244144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 6186837 - 6187198
Alignment:
| Q |
20 |
gtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacat |
119 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
6186837 |
gtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctacat |
6186936 |
T |
|
| Q |
120 |
gatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaac |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
6186937 |
gatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaac |
6187036 |
T |
|
| Q |
220 |
aacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatca |
319 |
Q |
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||||||||||||||||||||| ||||| ||||||||| | | || ||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
6187037 |
aacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatca |
6187136 |
T |
|
| Q |
320 |
aattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctag |
381 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||| |
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|
| T |
6187137 |
aattgtttgttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctag |
6187198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 6169956 - 6170129
Alignment:
| Q |
85 |
caaaaaaggatgaaagttttgattaatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatcca |
184 |
Q |
| |
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||||||||||||| |||| | |||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| |||||| |
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| T |
6169956 |
caaaaaaggatgagggtttctactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatcca |
6170055 |
T |
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| Q |
185 |
tcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
258 |
Q |
| |
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| ||||||||||||||| |||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170056 |
tttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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