View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_28 (Length: 397)
Name: NF2662_low_28
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 52049428 - 52049084
Alignment:
| Q |
20 |
aaaatcccgttatctttgctgaagcattctggttttgaataaaccacaactgttgcaacatcttggaccacactcttcagtccactcaaaacacaaagac |
119 |
Q |
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| T |
52049428 |
aaaatcccgttatctttgctgaagcattctggttttgaataaaccacaactgttgcaacatcttggaccacactcttcagtccactcaaaacacaaagac |
52049329 |
T |
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| Q |
120 |
atgcttattgaatagtgatcatatcctcaacttgcaattgtaatcacaagtaaacattaaaacactctccaatgtttgtttcttattgtaatgccaattn |
219 |
Q |
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| T |
52049328 |
aagcttattgaatagtgatcatatcctcaacttgcaattgtaatcacaagtaaacattaaaacactctccaatgtttgtttcttattgtaatgccaattg |
52049229 |
T |
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| Q |
220 |
nnnnnnccaaaatcttacaatacgtgcaaattgaagatctacaaggccagaccaccacacaaaaacagaaaggctccgcannnnnnngtagtatttgcgt |
319 |
Q |
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| T |
52049228 |
ggggggccaaaatcttacaatacgtgcaaattgaagatctacaaggccagaccaccacacaaaaacagaaaggctccgcatttttttgtagtatttgcgt |
52049129 |
T |
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| Q |
320 |
acaaaacataattgagtgagttgaatgtgtttttctctacatcca |
364 |
Q |
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| T |
52049128 |
acaaaacataattgagtgagttgaatgtgtttttctgtacatcca |
52049084 |
T |
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