View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_34 (Length: 360)
Name: NF2662_low_34
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 1028195 - 1027849
Alignment:
| Q |
1 |
gttgtaaatagtttatgaaaaacatggtgtcggctgtttgcctgtgtctataagttctccccaagagtctcataaatgcttatgcaacacataaactcaa |
100 |
Q |
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| T |
1028195 |
gttgtaaatagtttatgaaaaacatgttgtcggctgtttgcctgtgtctataagctctccccaagagtctcataaatgcttatgcaacagataaactcaa |
1028096 |
T |
|
| Q |
101 |
acaagtcaatccaagtagaccctttgtgttattattatgctctttcacaggcttatagtttcctaagcactacccatatcaacagtatttggacacacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
1028095 |
acaagtcaatccaagtagaccctttgtgttattattatgctctttcccaggcttatagtttcctaagcactacccaaatcaacagtgtttggacacacac |
1027996 |
T |
|
| Q |
201 |
ataaaacacactgcaaagttgaataccgtaaaacattagg---nnnnnnnnctaaagttttattcatttctttgtgagatgatgtagttgaatttttaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1027995 |
ataaaacacactgcaaagttgaataccgtaaaacattaggaaaaaaaaaaactaaagttttattcatttctttgtgagatgatgtagttgaatttttaat |
1027896 |
T |
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| Q |
298 |
tcttattatttttgcgatacatcatgctatgctttagactatgaatt |
344 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1027895 |
tcttattatttttgcgatacatcatgctttgctttagactatgaatt |
1027849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 1025563 - 1025525
Alignment:
| Q |
279 |
atgtagttgaatttttaattcttattatttttgcgatac |
317 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||| |
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| T |
1025563 |
atgtaggtgaatttttaattctgattatttttgcgatac |
1025525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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