View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_35 (Length: 353)
Name: NF2662_low_35
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 2467693 - 2468028
Alignment:
| Q |
1 |
acactttttctcacattcgctcctttcgttcccaaaaccatttaagagccagcacttttcatctttcaccacctcacttatatcctcttccattttcccc |
100 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
2467693 |
acactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcactttttatctttcaccacctcacttatatcctcttccatttttccc |
2467792 |
T |
|
| Q |
101 |
cctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcgggctacaacggtaatttcctgaacctatcttcaacttc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2467793 |
cctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcggtctacaacggtaatttcctgaacctatcttcaacttc |
2467892 |
T |
|
| Q |
201 |
atttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467893 |
atttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaa |
2467992 |
T |
|
| Q |
301 |
tgccaattggcaacacagaatgtgtcttctgatgat |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2467993 |
tgccaattggcaacacagaatgtgtcttctgatgat |
2468028 |
T |
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