View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_40 (Length: 317)
Name: NF2662_low_40
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_40 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 41551031 - 41551319
Alignment:
| Q |
15 |
tatatggaccatcagcattattagaag-agcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaat |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41551031 |
tatatggaccatcagcattattagaaggagcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaat |
41551130 |
T |
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| Q |
114 |
ttcctgaaggagtcaccacatccttgacatgaagagtaatgtccacataagagtgacacgtatttggtgtagctgtcaaatattcatggtatgaaagtcc |
213 |
Q |
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| T |
41551131 |
ttcctgaaggagtcaccacatccttgacatgaagagtaatgtccacataagagtgacacgtatttggtgtagctgtcaaatattcatggtatgaaagtcc |
41551230 |
T |
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| Q |
214 |
atacaaataaggaaaatgctctgatctccattcctctaacaacacaactcaatggaagacaaggaaacggtgaagacgacggtcccatg |
302 |
Q |
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| T |
41551231 |
atacaaataaggaaaatgctctgatctccattcctctaacaacacaactcaatggaagacaaggaaacggtgaagacgacggtcccatg |
41551319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 34568448 - 34568332
Alignment:
| Q |
41 |
gagcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatccttga |
140 |
Q |
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|||| ||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
34568448 |
gagcggggtgagctaaaacctattcaactatgtt-gtttggcagattatcaaaaagaaaattttgatcccaatttcctaaaggagtaaccatatccttga |
34568350 |
T |
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| Q |
141 |
catgaagagtaatgtcca |
158 |
Q |
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| T |
34568349 |
catgaagagtagtgtcca |
34568332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 109980 - 110086
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatccttgaca |
142 |
Q |
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|||||||||||||| ||||||||| ||||||| ||| || || ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| ||||| |
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| T |
109980 |
gcagggagagctaacaccttttcagctatgtt-gttaggcaggttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatccctgaca |
110078 |
T |
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| Q |
143 |
tgaagagt |
150 |
Q |
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||||||| |
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| T |
110079 |
agaagagt |
110086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 24784313 - 24784221
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
24784313 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
24784221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 35196679 - 35196771
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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| T |
35196679 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
35196771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 7797028 - 7796936
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
7797028 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
7796936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 8056029 - 8056121
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
8056029 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
8056121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 33700109 - 33700201
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|
|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
33700109 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
33700201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 46020073 - 46020165
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
46020073 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
46020165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 49573709 - 49573801
Alignment:
| Q |
43 |
gcagggagagctaaaaccttttcaactatgtttgtttggtagattatcaaaaagaaaattttgatcccaatttcctgaaggagtcaccacatcc |
136 |
Q |
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|||||||||||||| ||||||||||||||| ||||| || | ||||||||||| ||||||||||||||||| || |||| | ||| ||||||| |
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| T |
49573709 |
gcagggagagctaacaccttttcaactatg-ttgttaggcaagttatcaaaaaggaaattttgatcccaattaccagaagaactcatcacatcc |
49573801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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