View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_low_41 (Length: 316)

Name: NF2662_low_41
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_low_41
NF2662_low_41
[»] chr6 (13 HSPs)
chr6 (10-304)||(13872744-13873038)
chr6 (10-80)||(14049268-14049338)
chr6 (10-184)||(14112770-14112944)
chr6 (11-80)||(14017440-14017509)
chr6 (95-304)||(13470613-13470822)
chr6 (11-78)||(14027483-14027550)
chr6 (11-80)||(13890601-13890670)
chr6 (96-176)||(14049160-14049240)
chr6 (212-304)||(13860824-13860916)
chr6 (212-304)||(14027242-14027334)
chr6 (10-78)||(14087025-14087093)
chr6 (109-184)||(13943265-13943340)
chr6 (212-304)||(13943145-13943237)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 13872744 - 13873038
Alignment:
Q  10 caatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataacaagaatgaagatcaattttatatcggag 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872744 caatggtatggaattcgttgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataacaagaatgaagatcaattttatatcggag 13872843  T
Q  110 gtgatgtcgacaagtcactgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggcagtaatagtttaagnnnnnnnggttc 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||    
T  13872844 gtgatgtcgacaagtcagtgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggcagtaatagtttaggtttttttggttc 13872943  T
Q  210 tctaagaaacttaagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttga 304  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13872944 tctaagaaacataagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttga 13873038  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 14049338 - 14049268
Alignment:
Q  10 caatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataa 80  Q
    |||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  14049338 caatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgatcttcatggtgattataa 14049268  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 14112944 - 14112770
Alignment:
Q  10 caatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataacaagaatgaagatcaattttatatcggag 109  Q
    |||||| | ||||||  |||||||||| ||||| | |||||| |||||||||| ||||||||| | |||||  |   ||  |||  |||||||||| | |    
T  14112944 caatggaagggaattggttgcagcaacgtcacttgtcatgtaattatgctcgaccttcatggtaactataatgatggtgccgatacattttatatcagtg 14112845  T
Q  110 gtgatgtcgacaagtcactgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggca 184  Q
    ||||| || ||||||||||||| |||||| |||||||||||||||||||| ||||||| ||| ||||| ||||||    
T  14112844 gtgatatccacaagtcactgatagagttgcagcaattaaagtatttgaacctcagtggaaataattttgaaggca 14112770  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 14017509 - 14017440
Alignment:
Q  11 aatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataa 80  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  14017509 aatggtatggaattggttgcagcaacctcactggtcatgtacttatgctcaaccttcatggtgattataa 14017440  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 304
Target Start/End: Original strand, 13470613 - 13470822
Alignment:
Q  95 aattttatatcggaggtgatgtcgacaagtcactgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggcagtaatagttt 194  Q
    ||||||||||  | |||||| || |||||||| ||||||||||| |||||||||||||||||||| |  |||| ||| ||||| |||||| | |||   |    
T  13470613 aattttatatgagtggtgatatccacaagtcattgatggagttgcagcaattaaagtatttgaaccttggtggaaataattttgaaggcaattatatcct 13470712  T
Q  195 aagnnnnnnnggttctctaagaaacttaagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttg 294  Q
    |||       || |||||||||||| ||||||||||||| |||||| ||||     |||| ||| ||||| | |||||||| ||||||||| | ||||||    
T  13470713 aagtatctttggatctctaagaaacctaagataccttgatctttcaggttgcaatcttggaggacaaattcctattcaattcgagtctctttctcatttg 13470812  T
Q  295 aaatatttga 304  Q
    ||||| ||||    
T  13470813 aaatacttga 13470822  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 14027550 - 14027483
Alignment:
Q  11 aatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattat 78  Q
    ||||||||||||||  |||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  14027550 aatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgaccttcatggtgattat 14027483  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 13890601 - 13890670
Alignment:
Q  11 aatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattataa 80  Q
    ||||||||||||||  |||||||||||||||||| |||||||||| |||||| ||||||||||| |||||    
T  13890601 aatggtatggaattggttgcagcaacctcactggtcatgtacttaagctcgaccttcatggtgactataa 13890670  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 14049240 - 14049160
Alignment:
Q  96 attttatatcggaggtgatgtcgacaagtcactgatggagttgaagcaattaaagtatttgaacttcagtgggaattattt 176  Q
    |||||||||| | |||||| || |||| ||| ||||||||||| ||||| |||||||||||||| || |||||||||||||    
T  14049240 attttatatccgtggtgatatccacaactcattgatggagttgcagcaactaaagtatttgaacctccgtgggaattattt 14049160  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 13860824 - 13860916
Alignment:
Q  212 taagaaacttaagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttga 304  Q
    |||||||| ||||||||||||| |||||   |||||  ||||| ||| |||||   |||||||||||||||||| ||||||||||||| ||||    
T  13860824 taagaaacctaagataccttgatctttctaattgtcattttggaggacaaattcatattcaatttgagtctctttcgcatttgaaatacttga 13860916  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 14027334 - 14027242
Alignment:
Q  212 taagaaacttaagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttga 304  Q
    |||||||| ||||||||||||| ||||||  |||||  ||||| ||| ||||| | |||||||| ||||||||| | ||||||||||| ||||    
T  14027334 taagaaacctaagataccttgatctttcatattgtcattttggaggacaaattcctattcaattggagtctctttcacatttgaaatacttga 14027242  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 14087093 - 14087025
Alignment:
Q  10 caatggtatggaattcattgcagcaacctcactggccatgtacttatgctcgatcttcatggtgattat 78  Q
    |||||| | ||||||  ||||| |||||||||||||||||||||||||||| | ||||||||| |||||    
T  14087093 caatggaagggaattggttgcaacaacctcactggccatgtacttatgctcaaccttcatggtaattat 14087025  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 13943340 - 13943265
Alignment:
Q  109 ggtgatgtcgacaagtcactgatggagttgaagcaattaaagtatttgaacttcagtgggaattattttaaaggca 184  Q
    |||||| || |||||||||||||||||||| | || ||| | ||||||||||||||| | ||| ||||| ||||||    
T  13943340 ggtgatatccacaagtcactgatggagttgcaacagttacaatatttgaacttcagtagaaataattttgaaggca 13943265  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 13943237 - 13943145
Alignment:
Q  212 taagaaacttaagataccttgacctttcacgttgtcgctttggtggaaaaatttcaattcaatttgagtctcttccgcatttgaaatatttga 304  Q
    |||||||| ||||||||||||| ||||||  ||||   ||| | ||| ||||| | |||||||| ||||||||| | ||||||||||| ||||    
T  13943237 taagaaacctaagataccttgatctttcatattgttattttcgaggacaaattcctattcaattggagtctctttcacatttgaaatacttga 13943145  T

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