View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_72 (Length: 227)
Name: NF2662_low_72
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 2306459 - 2306588
Alignment:
| Q |
17 |
atccaaacgcaaaccaatgcaggtatactctcataacctaactaactattttttcctttgtttaactaattagggtttaggaatattttattttcttcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2306459 |
atccaaacgcaaaccaatgcaggtatactctcataacctaactaaccattttttcctttgtttaactaattagggtttagggatattttattttcttcct |
2306558 |
T |
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| Q |
117 |
aaaactttgaagttccattactatagctag |
146 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2306559 |
aaaactttgaagttccattactatagctag |
2306588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 31886646 - 31886775
Alignment:
| Q |
17 |
atccaaacgcaaaccaatgcaggtatactctcataacctaactaactattttttcctttgtttaactaattagggtttaggaatattttattttcttcct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
31886646 |
atccaaacgcaaaccaatgcaggtatactctcataacctaactaaccattttttcctttgtttaactaattagggtttagggatattttactttcttcct |
31886745 |
T |
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| Q |
117 |
aaaactttgaagttccattactatagctag |
146 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31886746 |
aaaactttgaagttccattactatagctag |
31886775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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