View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2662_low_77 (Length: 209)

Name: NF2662_low_77
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2662_low_77
NF2662_low_77
[»] chr7 (1 HSPs)
chr7 (30-117)||(84585-84673)
[»] chr4 (1 HSPs)
chr4 (30-117)||(52869655-52869743)
[»] chr3 (1 HSPs)
chr3 (30-117)||(41041045-41041133)
[»] chr5 (1 HSPs)
chr5 (55-117)||(39148973-39149036)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 84673 - 84585
Alignment:
Q  30 cccccacagaaaaatccnnnnnnnctagccaaccttgggtagaaatacac-gattaataggaagtgggatgagatgttgggcggaagca 117  Q
    |||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  84673 cccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaataggaagtgggatgagatgttgggcggaagca 84585  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 52869743 - 52869655
Alignment:
Q  30 cccccacagaaaaatccnnnnnnnctagccaaccttgggtagaaatacac-gattaataggaagtgggatgagatgttgggcggaagca 117  Q
    |||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52869743 cccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaataggaagtgggatgagatgttgggcggaagca 52869655  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 41041045 - 41041133
Alignment:
Q  30 cccccacagaaaaatccnnnnnnnctagccaaccttgggtagaaatacac-gattaataggaagtgggatgagatgttgggcggaagca 117  Q
    |||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41041045 cccccacagaaaaatccaaaaaaactagccaaccttgggtagaaatacactgattaataggaagtgggatgagatgttgggcggaagca 41041133  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 39149036 - 39148973
Alignment:
Q  55 tagccaaccttgggtagaaatacac-gattaataggaagtgggatgagatgttgggcggaagca 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39149036 tagccaaccttgggtagaaatacactgattaataggaagtgggatgagatgttgggcggaagca 39148973  T

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