View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_79 (Length: 202)
Name: NF2662_low_79
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 21725155 - 21725321
Alignment:
| Q |
17 |
cacagatttacctttttctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactacaagcttaaaccataagcacaatcagtat |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21725155 |
cacagatttaccttttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtat |
21725254 |
T |
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| Q |
117 |
ggctttgatcttgaagaacttttctatgaatgaactattaactgatgcagcagtattactagcaatc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
21725255 |
ggctttgatcttgaagaacttttctatgaatgaactattaactgttgcagcagtattattagcaatc |
21725321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 21804880 - 21805046
Alignment:
| Q |
17 |
cacagatttacctttttctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactacaagcttaaaccataagcacaatcagtat |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21804880 |
cacagatttaccttttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcagtat |
21804979 |
T |
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| Q |
117 |
ggctttgatcttgaagaacttttctatgaatgaactattaactgatgcagcagtattactagcaatc |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
21804980 |
ggctttgatcttgaagaacttttctatgaatgaactattaactgttgcagcagtattattagcaatc |
21805046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 9988290 - 9988454
Alignment:
| Q |
17 |
cacagatttacctttttctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactacaagcttaaaccataagcacaatcagtat |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
9988290 |
cacagatttaccttttgctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactactagcttaaaccataagcacaatcaatat |
9988389 |
T |
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| Q |
117 |
ggctttgatcttgaagaacttttctatgaatgaactattaactgatgcagcagtattactagcaatc |
183 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
9988390 |
ggctttgatcttgaagaacttt--tatgaatgaactattaactgttgcagcagtattattagcaatc |
9988454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 25330774 - 25330625
Alignment:
| Q |
34 |
ctatacaacgaaatgaaatgcatataaggttgattaattgactaaaaaacactacaagcttaaaccataagcacaatcagtatggctttgatcttgaaga |
133 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25330774 |
ctatataaagaaatgaaatgcatataagcttgattaattgactaaaaaacactattatcttaaaccataagcacaatcactatggctttgatcttgaaga |
25330675 |
T |
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| Q |
134 |
acttttctatgaatgaactattaactgatgcagcagtattactagcaatc |
183 |
Q |
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| |||||| ||| ||| ||||||||| ||||||||| ||| ||| |||| |
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| T |
25330674 |
atttttctttgacagaattattaactgctgcagcagtgttagtagtaatc |
25330625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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