View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2662_low_9 (Length: 648)
Name: NF2662_low_9
Description: NF2662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2662_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Original strand, 1831328 - 1831950
Alignment:
| Q |
19 |
gttatagttgttatttgacaatactaatctatatacatgaatacattggtggctaccacttattgttacacagacatatacttggcaaaacatgaaaaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831328 |
gttatagttgttatttgacaatactaatctatatacatgaatacattggtggctaccacttattgttacacagacatatacttggcaaaacatgaaaaat |
1831427 |
T |
|
| Q |
119 |
cgacgaatacatgactgaatgaaagttttgttattacgaaccaattgtaggcaactttaggctattgttacagaaaatagtatcatataccatatcatag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831428 |
cgacgaatacatgactgaatgaaagttttgttattacgaaccaattgtaggcaactttaggctattgttacagaaaatagtatcatataccatatcatag |
1831527 |
T |
|
| Q |
219 |
atatcttggtatggcttacactcaatatcagtttcaagctcatcgtcaannnnnnngcagggtggatcaggttatgcaagacatattacatatgaccaaa |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831528 |
atatcttggtatggcttacactcaatatcagtttcaagctcatcgtcaatttttttgcagggtggatcaggttatgcaagacatattacatatgaccaaa |
1831627 |
T |
|
| Q |
319 |
ttatccttgttaatgttaagaaccccataattatagatcaatattacaatgatattattcctcaggtacatatttcattctacattattcataattatta |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831628 |
ttatccttgttaatgttaagaactccataattatagatcaatattacaatgatattattcctcaggtacatatttcattctacattattcataattatta |
1831727 |
T |
|
| Q |
419 |
tatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaattattaggctggagatgtgtcgg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831728 |
tatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaattattaggctggagatgtgtcgg |
1831827 |
T |
|
| Q |
519 |
tgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattgga |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
1831828 |
tgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattgga |
1831927 |
T |
|
| Q |
619 |
tcaaaacaaaattgtctctgctc |
641 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1831928 |
tcaaaacaaaattgtctctgctc |
1831950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Original strand, 1865771 - 1866393
Alignment:
| Q |
19 |
gttatagttgttatttgacaatactaatctatatacatgaatacattggtggctaccacttattgttacacagacatatacttggcaaaacatgaaaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865771 |
gttatagttgttatttgacaatactaatctatatacatgaatacattggtggctaccacttattgttacacagacatatacttggcaaaacatgaaaaat |
1865870 |
T |
|
| Q |
119 |
cgacgaatacatgactgaatgaaagttttgttattacgaaccaattgtaggcaactttaggctattgttacagaaaatagtatcatataccatatcatag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1865871 |
cgacgaatacatgactgaatgaaagttttgttattacgaaccaattgtaggcaactttaggctattgttacagaaaatagtatcatataccatatcatag |
1865970 |
T |
|
| Q |
219 |
atatcttggtatggcttacactcaatatcagtttcaagctcatcgtcaannnnnnngcagggtggatcaggttatgcaagacatattacatatgaccaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865971 |
atatcttggtatggcttacactcaatatcagtttcaagctcatcgtcaatttttttgcagggtggatcaggttatgcaagacatattacatatgaccaaa |
1866070 |
T |
|
| Q |
319 |
ttatccttgttaatgttaagaaccccataattatagatcaatattacaatgatattattcctcaggtacatatttcattctacattattcataattatta |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1866071 |
ttatccttgttaatgttaagaactccataattatagatcaatattacaatgatattattcctcaggtacatatttcattctacattattcataattatta |
1866170 |
T |
|
| Q |
419 |
tatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaattattaggctggagatgtgtcgg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866171 |
tatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaattattaggctggagatgtgtcgg |
1866270 |
T |
|
| Q |
519 |
tgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattgga |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
1866271 |
tgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctggttgaaccaacattcaattgga |
1866370 |
T |
|
| Q |
619 |
tcaaaacaaaattgtctctgctc |
641 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1866371 |
tcaaaacaaaattgtctctgctc |
1866393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 641
Target Start/End: Original strand, 2534169 - 2534317
Alignment:
| Q |
493 |
aaattattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcc |
592 |
Q |
| |
|
||||||||||| || | |||||||||||||| |||| || |||||||||||| |||||||| |||| || |||||||||||||||||||||| |||| |
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| T |
2534169 |
aaattattagggtgcaaatgtgtcggtgagttcagtgaaatttcgaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctct |
2534268 |
T |
|
| Q |
593 |
tctggttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
641 |
Q |
| |
|
||||||||| ||||| |||||| |||||||| ||||| ||||||| |
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|
| T |
2534269 |
tctggttgttatgacattttattggaacaaaacaacattgtttctgctc |
2534317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 2543412 - 2543495
Alignment:
| Q |
275 |
gcagggtggatcaggttatgcaagacatattacatatgaccaaattatccttgttaatgttaagaaccccataattatagatca |
358 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
2543412 |
gcagggtggattaggttatgcaaaacatattacatttgagcaaatcatccttgttaatgttaacaacccaataattatagatca |
2543495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 641
Target Start/End: Original strand, 2543613 - 2543761
Alignment:
| Q |
493 |
aaattattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcc |
592 |
Q |
| |
|
||||||||||| || | |||||||||||||| |||| || || ||||||||| |||||||| |||| || |||||||||||||||||||||| |||| |
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| T |
2543613 |
aaattattagggtgcaaatgtgtcggtgagttcagtgaaatttcaaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctct |
2543712 |
T |
|
| Q |
593 |
tctggttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
641 |
Q |
| |
|
||||||||| ||||| |||||| |||||||| ||||| ||||||| |
|
|
| T |
2543713 |
tctggttgttatgacattttattggaacaaaacaacattgtttctgctc |
2543761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 2566341 - 2566421
Alignment:
| Q |
275 |
gcagggtggatcaggttatgcaagacatattacatatgaccaaattatccttgttaatgttaagaaccccataattataga |
355 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||||| |||||| ||||||||||||||| ||||||||||| |
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|
| T |
2566341 |
gcagggtggatcaggttatgcaagacagattacatttgaacaaatcatccttagtaatgttaagaacccaataattataga |
2566421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 633
Target Start/End: Original strand, 2556730 - 2556836
Alignment:
| Q |
527 |
gtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattggatcaaaaca |
626 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| | | ||||| || | ||||||||| |||||||||||||| | |||||| |||||||||||| | |
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|
| T |
2556730 |
gtgacatatcgaggatttaccggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata |
2556829 |
T |
|
| Q |
627 |
aaattgt |
633 |
Q |
| |
|
| ||||| |
|
|
| T |
2556830 |
acattgt |
2556836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 2556484 - 2556561
Alignment:
| Q |
275 |
gcagggtggatcaggttatgcaagacatattacatatgaccaaattatccttgttaatgttaagaaccccataattat |
352 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| ||| | |||||| |||||||| |||||| |||||||| |
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|
| T |
2556484 |
gcagggtggatcaggttatgcaagacagattacatttgagcaagtcatccttagtaatgttatgaacccaataattat |
2556561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 633
Target Start/End: Original strand, 2566546 - 2566662
Alignment:
| Q |
517 |
ggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattg |
616 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||| | | ||||| || | ||||||||| ||||| |||||||| ||| |||| |||| |
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|
| T |
2566546 |
ggtgagttctgtgacatatcgaggatttattggaacttctgctagcaagatagctgttaatttaaattgtagctcccctggttgtttcaatattctattg |
2566645 |
T |
|
| Q |
617 |
gatcaaaacaaaattgt |
633 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
2566646 |
gatcaaaataacattgt |
2566662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 2551104 - 2551148
Alignment:
| Q |
511 |
tgtgtcggtgagtgatgtgacatatcgaggatttactggaacttc |
555 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
2551104 |
tgtgtcggtgagagatgtgacatatcgaggatttaccggaacttc |
2551148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 2550907 - 2550988
Alignment:
| Q |
277 |
agggtggatcaggttatgcaagacatattacatatgaccaaattatccttgttaatgttaagaaccccataattatagatca |
358 |
Q |
| |
|
||||||||||||||||||| ||| | || |||| ||| || ||| | ||||| ||||||| |||||| ||||| |||||||| |
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|
| T |
2550907 |
agggtggatcaggttatgctagaaaaataacatttgagcatattgtgcttgtcaatgttatgaacccgataataatagatca |
2550988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 540
Target Start/End: Original strand, 2546748 - 2546780
Alignment:
| Q |
508 |
agatgtgtcggtgagtgatgtgacatatcgagg |
540 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
2546748 |
agatgtgtcggtgagtgatgtaacatatcgagg |
2546780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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