View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_high_20 (Length: 277)
Name: NF2663_high_20
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 5503001 - 5502896
Alignment:
| Q |
145 |
cagtactgctactagtaccgtcacaatattcagaatatttaattgtttcaaattgtttattattttagaaaatgagttttctttttgaaaggaaatttta |
244 |
Q |
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| T |
5503001 |
cagtactgctactagtaccgtcacaatattcagaatatttaattgtttcaaattgtttattattttagaaaatgagttttctttttgaaaggaaatttta |
5502902 |
T |
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| Q |
245 |
gaaaat |
250 |
Q |
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|||||| |
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| T |
5502901 |
gaaaat |
5502896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5503134 - 5503017
Alignment:
| Q |
1 |
cttccaagatgctattcaatctgacaaaaatttcctgggaaccaaaactgaaaaatagtaaatattgtagtactccatactccatccatttcatataaat |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5503134 |
cttccaagatgctattcaatctgacaaaattttcctgggaaccaaaactgaaaaatagtaaatatt---gtactccatactccatccatttcatataaat |
5503038 |
T |
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| Q |
101 |
aaacagtacctctatttcaac |
121 |
Q |
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||||||||||||||||||||| |
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| T |
5503037 |
aaacagtacctctatttcaac |
5503017 |
T |
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