View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2663_high_22 (Length: 263)
Name: NF2663_high_22
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_high_22 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 38183846 - 38183980
Alignment:
| Q |
129 |
agatgtatgcatctcaccatactgatttaacatctaaccatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183846 |
agatgtatgcatctcaccatattgatttaacatctaactatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa |
38183945 |
T |
|
| Q |
229 |
aagcatctaaccacagacagaagaaagaaacaata |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183946 |
aagcatctaaccacagacagaagaaagaaacaata |
38183980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 38183684 - 38183731
Alignment:
| Q |
30 |
ataaaaatattgaaattgatcttattcatatagttttttcaaaatccc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183684 |
ataaaaatattgaaattgatcttattcatatagttttttcaaaatccc |
38183731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 49011200 - 49011323
Alignment:
| Q |
129 |
agatgtatgcatctcaccatactgatttaacatctaaccatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa |
228 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
49011200 |
agatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagct--aagtacaatccttgttcaattcccacaa |
49011297 |
T |
|
| Q |
229 |
aagcatctaaccacagacagaagaaa |
254 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
49011298 |
aagcagctaaccacagacagaagaaa |
49011323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 49011122 - 49011165
Alignment:
| Q |
33 |
aaaatattgaaattgatcttattcatatagttttttcaaaatcc |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49011122 |
aaaatattgaaattgatcttattcgtatagttttttcaaaatcc |
49011165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University