View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_high_25 (Length: 250)
Name: NF2663_high_25
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38183617 - 38183439
Alignment:
| Q |
1 |
aaagtaaaactacaaggtgattgcatattagacgtaagtgtcagtcaatttatgcagaatttgttttaggaccatatatggtattacttttcaatcttac |
100 |
Q |
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| T |
38183617 |
aaagtaatactacaaggtgattgcatattagacgtaagtgtcagtcaatttatgcagaatttgttttaggaccatatatggtattacttttcaatcttac |
38183518 |
T |
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| Q |
101 |
aaggtgattgcatattacaatcatactttctggaacctgatcccaatcccatacctggtggtaaagctctattgatgttc |
180 |
Q |
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| T |
38183517 |
aaggtgattgcatattacaatcatactttctggaacctgat-ccaatcccatacctggtggtaaagctctattgatgttc |
38183439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 38183443 - 38183408
Alignment:
| Q |
206 |
tgttcaagtgctaaataattcaagtgatattcatct |
241 |
Q |
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| T |
38183443 |
tgttcacgtgctaaataattcaagtgatattcatct |
38183408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 49011048 - 49010843
Alignment:
| Q |
9 |
actacaaggtgattgcatattagacgtaagtgtcagtcaatttatgcagaatttgttttaggaccatatatggtattacttttcaatcttacaaggtgat |
108 |
Q |
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| T |
49011048 |
actacaaggtgattgcatattagacttaagtgtcagtcaatttatgcagaatttattttatgaccatttatggtattactttccaatcttccaaggtgat |
49010949 |
T |
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| Q |
109 |
tgcatattacaatcatactttctggaacctgatcccaatcccatacctggtggtaaagctctattgatgttcccagtccgactcaacaacatacttttgt |
208 |
Q |
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| T |
49010948 |
tgcatattataatctta-tttctggaacctgatcccaatcccatacctggtggtaaagctttattgatgttcccagtgcgactcaacaacatacttttgt |
49010850 |
T |
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| Q |
209 |
tcaagtg |
215 |
Q |
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| T |
49010849 |
tcaagtg |
49010843 |
T |
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