View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_high_26 (Length: 238)
Name: NF2663_high_26
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53493089 - 53493310
Alignment:
| Q |
1 |
agctcctttcactgcttcttacagaaacttcaatgctaatgcatgcattgtgtcttctggaatatcatcttgtgattcagcacaatctaataagaatgat |
100 |
Q |
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| T |
53493089 |
agctcctttcactgcttcttacagacacttcaatgctaatgcatgcattgtgtcttctggaatatcatcttgtgattcagcacaatctaataagaatgat |
53493188 |
T |
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| Q |
101 |
tggttctctgaggagctggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttc |
200 |
Q |
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| T |
53493189 |
tggttctctgaggagctggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttc |
53493288 |
T |
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| Q |
201 |
ctcagggtcttcctcaagaatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53493289 |
ctcagggtcttcctcaagaatg |
53493310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 53499381 - 53499416
Alignment:
| Q |
1 |
agctcctttcactgcttcttacagaaacttcaatgc |
36 |
Q |
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| T |
53499381 |
agctcctttcactgcttcttacagaaacttcaatgc |
53499416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 53495580 - 53495633
Alignment:
| Q |
148 |
ggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcc |
201 |
Q |
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| T |
53495580 |
ggttcagaagaattacatgatttacaattattgcactgacatcaaaagatttcc |
53495633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 37189016 - 37189236
Alignment:
| Q |
2 |
gctcctttcactgcttcttacagaaacttcaatgctaatgcatgcattgtgtcttctggaatatcatcttgtgattcagcacaatctaataagaatgatt |
101 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||| ||||||||| || |
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| T |
37189016 |
gctccttttactgcttcttatagaaacttcaatgctaatgcatgtactgtgtcttctggaacatcatcttgtagttcaacacaatccaataagaattctt |
37189115 |
T |
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| Q |
102 |
ggttctctgaggagctggattcaacaagttatgagaggctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcc |
201 |
Q |
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| T |
37189116 |
ggttctctgaggagttggattctacaagtcatgagaggctcaagtgggtgcagaagaattatatgatctacaactactgcactgataccaaaagatttcc |
37189215 |
T |
|
| Q |
202 |
tcagggtcttcctcaagaatg |
222 |
Q |
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| T |
37189216 |
tcagggtcttcctcaagaatg |
37189236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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