View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_10 (Length: 441)
Name: NF2663_low_10
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 3 - 428
Target Start/End: Complemental strand, 20465657 - 20465231
Alignment:
| Q |
3 |
atcaatttggtgatcaaaagctaattgcattaattaaaaa-cttggaatggttcatctatatgtggatattatgctttacttggtagtataaggtggatg |
101 |
Q |
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| T |
20465657 |
atcaatttgatgatcaaaagctaattgcattaattaagaagcttggaatggttcatctatatgtggatattatgctttacttggtagtataaggtggatg |
20465558 |
T |
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| Q |
102 |
gaaatggaattagaatggtcggtgtaaaattcaacttaatgatcaaaagcttattgcagtacttatgctttacttgttattacccaatgtgtgttgttca |
201 |
Q |
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| T |
20465557 |
gaaatggaattagaatggtcggtgtaaagttcaacttaatgatcaaaagcttattgcagtacttatgctttacttgttattacccaatgtgtgttgttca |
20465458 |
T |
|
| Q |
202 |
ctgtcaatggaaattccactctaatattttacttatgtacttgattaaagtgaacaaacaatagtatgtatgaagtatctgtacacaaaaacaaccaatt |
301 |
Q |
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| T |
20465457 |
ctgtcaatggaaattccactctaatattttacttatgtacttgattaaagtgaacaaacaatagtatgtatgaagtatctgtacacaaaaacaaccaatt |
20465358 |
T |
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| Q |
302 |
aaacgaaagccaaacatcacactgccttagtgtccagtttcttcctcattaatttcaagcttgtcatttccaatttggtaaatccacaaattcaaaatga |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20465357 |
aaacgaaagccaaacatcacactgccttagtgtccagtttcttcctcattaatttcaagcttgtcatttccaatttggtaaatccacaaaaacaaaatga |
20465258 |
T |
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| Q |
402 |
tgaagaaatggtaatgaacatgttagt |
428 |
Q |
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| T |
20465257 |
tgaagaaatggtaatgaacatgttagt |
20465231 |
T |
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