View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_11 (Length: 406)
Name: NF2663_low_11
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 29579010 - 29578634
Alignment:
| Q |
19 |
ccataaacacatgtttctttttgcactactttgtctccaagagtcggtatggaactaacactgttatccttcattacttaactcatgctgtaaattcatt |
118 |
Q |
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| T |
29579010 |
ccataaacacatgtttctttttgcactactttgtctccaagagtcgatatggaactaacactgttatccttcattacttaactcatgctgtaaattcatt |
29578911 |
T |
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| Q |
119 |
gcttaaactttctcttgaaacctttgtttattttattcaacgaggattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcatt |
218 |
Q |
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| T |
29578910 |
gctcaaactttctcttgaaacctttgtttattttattcaacgaggattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcatt |
29578811 |
T |
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| Q |
219 |
gtgctggttgccatgattatcaatcaaactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgtta |
318 |
Q |
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| T |
29578810 |
gtgctggttgccatgattatcaatcaaactctttccattcataatcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgtta |
29578711 |
T |
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| Q |
319 |
tcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcat |
395 |
Q |
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| T |
29578710 |
tcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcat |
29578634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 41 - 378
Target Start/End: Complemental strand, 29583174 - 29582820
Alignment:
| Q |
41 |
gcactactttgtctccaagagtcggtatggaactaacactgttatccttcattacttaactcatgctgtaaat-----------------tcattgctta |
123 |
Q |
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| T |
29583174 |
gcactattttgtctccaagactcagaatagaaccaacactgttatccttcattacttaactcatgttgtaaatgtagtcgtctaaagaattcattgctct |
29583075 |
T |
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| Q |
124 |
aactttctcttgaaacctttgtttattttattcaacgaggattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgct |
223 |
Q |
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||||| ||||| |||||||||| || || || ||| | ||||||||| || ||||||||| |||||||| ||||||||| ||| ||| ||||||| |
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| T |
29583074 |
aacttaatcttggaacctttgttgatcttgtttaacattgcctcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgct |
29582975 |
T |
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| Q |
224 |
ggttgccatgattatcaatcaaactctttccattcataatcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctc |
323 |
Q |
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| T |
29582974 |
ggttgccatgattatcaatcaaactttttccgttcataattgcagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctc |
29582875 |
T |
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| Q |
324 |
cattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagct |
378 |
Q |
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||||||||||||| ||||||||||||| || ||||||||||| | ||||||||| |
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| T |
29582874 |
cattactttactcattttgtaaagatagtcgtccaaagcattcattgctctagct |
29582820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 366
Target Start/End: Original strand, 8544616 - 8544813
Alignment:
| Q |
163 |
gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa |
262 |
Q |
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| T |
8544616 |
gattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaaactttttccctttatca |
8544709 |
T |
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| Q |
263 |
tcacagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc |
362 |
Q |
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| T |
8544710 |
ttgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagc |
8544809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 8580815 - 8580878
Alignment:
| Q |
304 |
gaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagcattta |
367 |
Q |
| |
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|||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
8580815 |
gaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcattta |
8580878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 8601083 - 8601143
Alignment:
| Q |
298 |
agcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttcca |
358 |
Q |
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| T |
8601083 |
agcatggaactaacactatcatccttcattacttttctcatagtgtaaagataatcatcca |
8601143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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