View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_12 (Length: 392)
Name: NF2663_low_12
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_12 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 85 - 369
Target Start/End: Original strand, 43712555 - 43712839
Alignment:
| Q |
85 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcat |
184 |
Q |
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| T |
43712555 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggactattacccaacatgatattgtatttgatgggatcat |
43712654 |
T |
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| Q |
185 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttct |
284 |
Q |
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| T |
43712655 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttatct |
43712754 |
T |
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| Q |
285 |
gggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatgatttacnnnnnnnnaattccattgtgtttttctt |
369 |
Q |
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| T |
43712755 |
tggtcgcttcttaggtgtcggaataggttcttctatcagtttcctggtatgatttacttttttttaattccattgtgtttttctt |
43712839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 90 - 341
Target Start/End: Original strand, 43697637 - 43697888
Alignment:
| Q |
90 |
tgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacaga |
189 |
Q |
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| T |
43697637 |
tgttgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacaga |
43697736 |
T |
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| Q |
190 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtc |
289 |
Q |
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| T |
43697737 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtc |
43697836 |
T |
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| Q |
290 |
gattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
341 |
Q |
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| T |
43697837 |
gattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
43697888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 115 - 335
Target Start/End: Original strand, 43726181 - 43726401
Alignment:
| Q |
115 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
214 |
Q |
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| T |
43726181 |
aatgaggcacttgcaaggatggcaagtttgggactattgcccaatatgatattgtatttcatgggaagttacaggcttcatcttgccaaagctactcaga |
43726280 |
T |
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| Q |
215 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
314 |
Q |
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| T |
43726281 |
ttcttctcttatcctctgcagctagcaatttcacacctgtggttggtgcttttattgcagattcttatctcggtcggttcctcggtgttggattaggttc |
43726380 |
T |
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| Q |
315 |
ttctatcagtttcctggtatg |
335 |
Q |
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| T |
43726381 |
atttgtcagcttcctggtatg |
43726401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 115 - 333
Target Start/End: Original strand, 43685111 - 43685329
Alignment:
| Q |
115 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
214 |
Q |
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||||| |||||||||| |||||||||| |||||| ||| ||||||||||||||||| ||||| || |||| ||||| |||| || | |||| |||| |
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| T |
43685111 |
aatgaggcacttgctaggatggcaagtactggattaggacctaacatgatattgtatttgatgggttcttacaatcttcatcttgccacagctacccaga |
43685210 |
T |
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| Q |
215 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
314 |
Q |
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||||||| |||||||||||||| | |||||||||||| | ||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
43685211 |
tacttctcatatcctctgcagctggaaatttcacacctcttgttgctgcttttattgcagattcttatattggtcgattcctaggtgttggaataggttc |
43685310 |
T |
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| Q |
315 |
ttctatcagtttcctggta |
333 |
Q |
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| T |
43685311 |
tattatcagtttcctggta |
43685329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 335
Target Start/End: Complemental strand, 26223 - 26045
Alignment:
| Q |
157 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
256 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || |||| ||||||| ||||| |||| |||||| |
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| T |
26223 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatttgctgcagccagcaagttcatgcctgtgg |
26124 |
T |
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| Q |
257 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
335 |
Q |
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|||||||||||||||||||||||| | ||||||||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
26123 |
ttggtgcttttattgcagattcttatttgggtcgattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
26045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 157 - 335
Target Start/End: Original strand, 25272008 - 25272186
Alignment:
| Q |
157 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
256 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || ||||| ||||||| |||| |||| |||||| |
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| T |
25272008 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatctgctgcagccggcaagttcatgcctgtgg |
25272107 |
T |
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| Q |
257 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
335 |
Q |
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||||||||||| |||||||||||| | ||||| ||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
25272108 |
ttggtgcttttgttgcagattcttatttgggtagattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
25272186 |
T |
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