View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2663_low_15 (Length: 361)

Name: NF2663_low_15
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2663_low_15
NF2663_low_15
[»] chr8 (24 HSPs)
chr8 (78-351)||(43269926-43270199)
chr8 (78-349)||(2169816-2170087)
chr8 (78-349)||(17698958-17699229)
chr8 (84-349)||(20823778-20824043)
chr8 (83-349)||(37433613-37433879)
chr8 (113-335)||(13199636-13199856)
chr8 (77-351)||(2529363-2529635)
chr8 (78-274)||(29733418-29733613)
chr8 (77-297)||(25089863-25090082)
chr8 (89-202)||(42178084-42178197)
chr8 (78-263)||(28415621-28415805)
chr8 (187-297)||(13879932-13880042)
chr8 (197-297)||(12257896-12257996)
chr8 (197-297)||(12265288-12265388)
chr8 (275-350)||(42177956-42178031)
chr8 (200-316)||(171701-171817)
chr8 (197-297)||(34137408-34137508)
chr8 (205-300)||(9922204-9922299)
chr8 (81-156)||(10565519-10565594)
chr8 (200-297)||(41665814-41665911)
chr8 (200-319)||(7923984-7924103)
chr8 (200-319)||(13395986-13396105)
chr8 (200-319)||(20496682-20496801)
chr8 (200-319)||(32567688-32567806)
[»] chr2 (14 HSPs)
chr2 (78-351)||(11000341-11000614)
chr2 (78-351)||(14439232-14439502)
chr2 (78-351)||(12645013-12645285)
chr2 (106-297)||(33516229-33516419)
chr2 (113-297)||(15917164-15917348)
chr2 (201-326)||(3400583-3400708)
chr2 (78-297)||(40176147-40176365)
chr2 (187-297)||(44022947-44023057)
chr2 (190-309)||(17765395-17765514)
chr2 (77-125)||(3400510-3400558)
chr2 (197-351)||(15391738-15391892)
chr2 (189-351)||(38604764-38604926)
chr2 (252-294)||(42563115-42563157)
chr2 (256-297)||(44473012-44473053)
[»] chr3 (26 HSPs)
chr3 (94-351)||(35214762-35215019)
chr3 (78-349)||(30695736-30696007)
chr3 (77-349)||(11203294-11203566)
chr3 (78-349)||(33496024-33496294)
chr3 (77-349)||(29524138-29524410)
chr3 (77-349)||(7031410-7031680)
chr3 (78-320)||(12342649-12342891)
chr3 (86-349)||(36801468-36801731)
chr3 (78-350)||(19890155-19890426)
chr3 (89-349)||(53184930-53185191)
chr3 (78-351)||(11310590-11310862)
chr3 (78-297)||(48570484-48570703)
chr3 (78-244)||(1680621-1680786)
chr3 (207-293)||(50651797-50651883)
chr3 (207-297)||(963608-963698)
chr3 (140-297)||(15312120-15312277)
chr3 (15-69)||(35215015-35215069)
chr3 (200-319)||(7312375-7312494)
chr3 (141-297)||(17098321-17098477)
chr3 (189-351)||(16178535-16178697)
chr3 (197-297)||(3140447-3140547)
chr3 (189-258)||(26771470-26771539)
chr3 (200-300)||(34333257-34333357)
chr3 (200-319)||(2363875-2363994)
chr3 (210-274)||(7031926-7031990)
chr3 (200-307)||(19920664-19920771)
[»] chr7 (11 HSPs)
chr7 (77-349)||(18529985-18530257)
chr7 (78-351)||(37254234-37254507)
chr7 (78-350)||(25618935-25619207)
chr7 (197-297)||(48394499-48394599)
chr7 (81-157)||(23911298-23911374)
chr7 (187-279)||(41698602-41698694)
chr7 (200-319)||(38890143-38890262)
chr7 (205-300)||(17720247-17720342)
chr7 (200-274)||(29967573-29967647)
chr7 (187-264)||(20535873-20535950)
chr7 (200-319)||(37919142-37919261)
[»] chr1 (21 HSPs)
chr1 (78-350)||(37192319-37192591)
chr1 (78-345)||(43387843-43388110)
chr1 (81-349)||(16918202-16918470)
chr1 (77-294)||(37297947-37298163)
chr1 (78-291)||(26206758-26206971)
chr1 (77-275)||(17400586-17400785)
chr1 (77-182)||(49094374-49094479)
chr1 (187-309)||(51994161-51994281)
chr1 (77-239)||(15568246-15568407)
chr1 (250-349)||(28351374-28351473)
chr1 (200-319)||(11909528-11909647)
chr1 (112-164)||(16272123-16272175)
chr1 (112-176)||(25560597-25560661)
chr1 (207-297)||(2490817-2490907)
chr1 (252-297)||(4646503-4646548)
chr1 (200-300)||(26059489-26059589)
chr1 (200-307)||(51052078-51052185)
chr1 (200-319)||(6259415-6259534)
chr1 (214-297)||(6478131-6478214)
chr1 (187-224)||(25560708-25560745)
chr1 (200-319)||(35540647-35540766)
[»] chr6 (17 HSPs)
chr6 (78-349)||(10929697-10929968)
chr6 (77-349)||(10577625-10577897)
chr6 (77-335)||(214878-215136)
chr6 (77-351)||(11461889-11462162)
chr6 (82-345)||(20883427-20883690)
chr6 (78-349)||(21630502-21630773)
chr6 (78-349)||(17606727-17606996)
chr6 (81-349)||(17579474-17579741)
chr6 (81-349)||(14513950-14514217)
chr6 (78-249)||(34714028-34714199)
chr6 (189-297)||(15959259-15959367)
chr6 (207-297)||(13937305-13937395)
chr6 (252-335)||(12429039-12429122)
chr6 (200-274)||(18651702-18651776)
chr6 (252-297)||(17330621-17330666)
chr6 (192-297)||(32536485-32536590)
chr6 (200-319)||(21167823-21167942)
[»] chr4 (23 HSPs)
chr4 (77-349)||(4548612-4548884)
chr4 (78-349)||(20002194-20002465)
chr4 (78-349)||(24506023-24506294)
chr4 (77-349)||(12697288-12697560)
chr4 (77-349)||(55725986-55726257)
chr4 (81-241)||(5142898-5143059)
chr4 (81-239)||(19468395-19468553)
chr4 (78-244)||(5147315-5147481)
chr4 (214-349)||(8360712-8360847)
chr4 (77-196)||(41973615-41973734)
chr4 (77-178)||(8360603-8360704)
chr4 (246-351)||(5148305-5148410)
chr4 (77-297)||(2822482-2822701)
chr4 (187-297)||(54483604-54483714)
chr4 (187-297)||(48311675-48311785)
chr4 (197-297)||(19740485-19740585)
chr4 (189-351)||(48241966-48242127)
chr4 (191-319)||(5790511-5790639)
chr4 (207-297)||(36223534-36223624)
chr4 (84-297)||(17402131-17402344)
chr4 (200-319)||(15739819-15739938)
chr4 (207-297)||(46145280-46145370)
chr4 (200-319)||(160114-160233)
[»] chr5 (24 HSPs)
chr5 (78-349)||(33385767-33386038)
chr5 (78-351)||(18359481-18359754)
chr5 (81-349)||(8300575-8300843)
chr5 (81-349)||(10773930-10774198)
chr5 (77-349)||(27766518-27766790)
chr5 (81-349)||(25857817-25858085)
chr5 (187-297)||(27795068-27795178)
chr5 (113-274)||(26019445-26019606)
chr5 (197-297)||(26072488-26072588)
chr5 (200-319)||(12824797-12824916)
chr5 (207-294)||(8941856-8941943)
chr5 (252-335)||(27166359-27166442)
chr5 (207-297)||(32228409-32228499)
chr5 (207-297)||(33169263-33169353)
chr5 (250-331)||(18148149-18148230)
chr5 (200-316)||(27117587-27117703)
chr5 (200-307)||(12820384-12820491)
chr5 (187-319)||(17106685-17106817)
chr5 (200-300)||(25824609-25824709)
chr5 (200-300)||(42927729-42927829)
chr5 (205-300)||(31641360-31641455)
chr5 (200-297)||(19255568-19255665)
chr5 (200-300)||(23237981-23238081)
chr5 (200-307)||(30732749-30732856)
[»] scaffold0178 (1 HSPs)
scaffold0178 (78-181)||(16865-16968)
[»] scaffold0472 (1 HSPs)
scaffold0472 (77-157)||(7395-7475)
[»] scaffold0161 (1 HSPs)
scaffold0161 (216-297)||(6454-6535)
[»] scaffold0369 (1 HSPs)
scaffold0369 (200-319)||(11628-11747)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 43269926 - 43270199
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  43269926 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgtcataacaattacgaaaagatcacaaccctgtcaaaattac 43270025  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  43270026 atcaaagataatcgatgctcatacataaaagcggactcgaccaccaaccatgtgtaccaaaaataaagactatgttactagctttcaaacaccacaaggt 43270125  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  43270126 atgtgattttactttatctagcaatagtggtatagaactttgacggttctgaaataacatgtcattccgttcat 43270199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 78 - 349
Target Start/End: Original strand, 2169816 - 2170087
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2169816 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcataagacgtgccataacaatcacgaaaagatcacaaccctgtcaaaattac 2169915  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  2169916 atcaaagataatcgatgtccatacataaaagcgggctcgaccaccaactatgtgtaccaaaaataaagactaagttactagctttcaaccaccacaaggt 2170015  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||||  |||||| ||||||| | |||  ||||||||| |||||||||||    
T  2170016 atgtgattttactttatctagcaatagatgtatagaactttgacgattcagaaataacatatcattccgttc 2170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 78 - 349
Target Start/End: Original strand, 17698958 - 17699229
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||| ||||||| |||| ||| |||| |||||    
T  17698958 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaaaacgtgccaaaacaatcacaaaaagattacaaccctatcaagattac 17699057  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||  |||||||| ||||||||||||||||||||| || |||||||||||||| |||| |||||| | ||||||||||||||||||    
T  17699058 atcaaagatagtcaatgtccatacatagaagcgggctcgaccaccaactatgcgtaccaaaaataaagactatgttactggttttcaaccaccacaaggt 17699157  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||  ||||||||| |||| ||||||||| |||||||||||    
T  17699158 atttgattttactttatctaacaatagtggtataaaactttgatgattctgaaataacatatcattccgttc 17699229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 84 - 349
Target Start/End: Original strand, 20823778 - 20824043
Alignment:
Q  84 caaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaa 183  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||  | ||||||||||||||||     
T  20823778 caaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaacacagtcaaaattacatcaag 20823877  T
Q  184 aataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtga 283  Q
     ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||    
T  20823878 gatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaaccaccacaaggtatttga 20823977  T
Q  284 ttttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||||||||||||||||||||||||||||| ||| ||| | |||| ||||||| | |||||||||||    
T  20823978 ttttactttatctagcaatagtggtatagaactgtgacgattctgaaataacctatcattccgttc 20824043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 83 - 349
Target Start/End: Original strand, 37433613 - 37433879
Alignment:
Q  83 acaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaa 182  Q
    |||||||| |||||||||||||| ||||||||||||||| ||| |||||||||  || ||||||||| ||||||| |||| |||||||| ||||||||||    
T  37433613 acaaaaatagaatatattactatcaacactgtaattgttaaagcacaagacgtatcaaaacaatcacaaaaagattacaaccctgtcaagattacatcaa 37433712  T
Q  183 aaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtg 282  Q
    | ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||||||||||| ||    
T  37433713 agatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctggctttcaaccaccacaaggtatttg 37433812  T
Q  283 attttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  37433813 attttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 37433879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 335
Target Start/End: Original strand, 13199636 - 13199856
Alignment:
Q  113 gtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataaaagcggg 212  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||| ||  ||||||||||| ||||| ||||   ||||||||| ||||||||||||||||    
T  13199636 gtaattgttgaagcacaaggcgtgcc-taacaatcacggaaagagcaacatcctgtcaaa-ttacaacaaagtcaatcgatgctcatacataaaagcggg 13199733  T
Q  213 ctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatag 312  Q
    |||||||||||| | |||||||||||| |||| || || |||||||||||| |||||||||||||||| |||||||||||||||| ||| ||||| ||||    
T  13199734 ctcgaccaccaattatgtgtaccaaaattaaagaccacattactagctttcgaccaccacaaggtatgagattttactttatctaacaaaagtggcatag 13199833  T
Q  313 tactttgatggttcttaaataac 335  Q
     ||||||| ||||  ||||||||    
T  13199834 aactttgacggtttctaaataac 13199856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 77 - 351
Target Start/End: Original strand, 2529363 - 2529635
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||| |||||  | ||||||||||||||||  |||||||||| || |  || |||| ||||||||||||| ||||| ||  ||||||||||| |||    
T  2529363 gaagaaaccaaaataaattatattactatgaacaacgtaattgttgcagcaacaggcgtgtcataacaatcacggaaagagcaacatcctgtcaaa-tta 2529461  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    || || |   ||||||||  ||||||| ||||||||||||||||||||   |||||||||||| |||| || || |||||||||||||||||||||||||    
T  2529462 caacatagtcaatcgatgt-catacatgaaagcgggctcgaccaccaatcatgtgtaccaaaattaaaaaccacattactagctttcaaccaccacaagg 2529560  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||| |||||||||||||||| ||| ||||| |||| ||||||| | ||  |||||||| |||||||||||||||    
T  2529561 tatgagattttactttatctaacaaaagtggcatagaactttgacgttttctaaataacctgtcattccgttcat 2529635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 29733613 - 29733418
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||| |||||| |||||||||| |  || || |||||||||  || ||||||||||||| |||||||||||||||| ||  |||| || || |||||    
T  29733613 aagaaactaaaatgaaatatattaccaaaaataccgtaattgttatagcacaagacgtgccaaaacaatcacgaaaagaacaacatccagt-aagattac 29733515  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    | ||||   ||| |||||||||||||| |||||| |||||||||||||| || ||||||||| |||| || || |||||||||||||||||||||||    
T  29733514 aacaaagtcaattgatgcacatacatacaagcggtctcgaccaccaactatgagtaccaaaagtaaagaccacattactagctttcaaccaccacaa 29733418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 297
Target Start/End: Original strand, 25089863 - 25090082
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||| |||||| | |||||||||| ||||||||||||||||  || ||||| ||||||| |||||||||||||  |  |||| || || || ||||    
T  25089863 gaagaaactaaaatgaattatattactaagaacactgtaattgttatagcacaaggcgtgccaaaacaatcacgaaacaacaacaa-ccagt-aagatta 25089960  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaa-taaacactacgttactagctttcaaccaccacaag 275  Q
    || |||    ||||||||| |||||||  ||||||||||||||||||| | || ||||| |||| |||| || || ||||||||||||| ||||||||||    
T  25089961 caacaaggtcaatcgatgcccatacatgcaagcgggctcgaccaccaattatgagtacccaaaagtaaagaccacattactagctttcagccaccacaag 25090060  T
Q  276 gtatgtgattttactttatcta 297  Q
    | || |||||||||||||||||    
T  25090061 gaatttgattttactttatcta 25090082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 42178197 - 42178084
Alignment:
Q  89 atggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataa 188  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||||| | || |||||||||| ||||||||||||  |||    
T  42178197 atggaatatattactttgaacaccgtaattattgaagtacaagacatgtcataacaatcacgaaaaaaacaaaatcctgtcagaattacatcaaagttaa 42178098  T
Q  189 tcgatgcacataca 202  Q
    ||||| | ||||||    
T  42178097 tcgatacccataca 42178084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 28415621 - 28415805
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||| |||||| | |||||||| | |||||  |||||||||| || ||||| |||||||||||||||||| | ||| ||  || || ||||| ||||    
T  28415621 aagaaaccaaaatgaattatattaccaagaacaacgtaattgttgcagcacaaggcgtgccataacaatcacggatagagcaacattctctcaaa-ttac 28415719  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttc 263  Q
    | || |   | ||||||| ||||||| |||||||||||||||||||| | |||||||||||| |||| || || ||||||||||||    
T  28415720 aacatagtcagtcgatgcccatacatgaaagcgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagctttc 28415805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 13880042 - 13879932
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||| | |||||||| |||||| |||||||||||| | || ||||||||  |||| || || |||| |||||||| |||||||| ||||| ||||||    
T  13880042 aatcgatacccatacatacaagcggactcgaccaccaattatgagtaccaaatgtaaagaccacattacgagctttcagccaccacagggtatttgattt 13879943  T
Q  287 tactttatcta 297  Q
    |||||||||||    
T  13879942 tactttatcta 13879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 12257996 - 12257896
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |||||| ||||||||||  | || ||||||||| || | || ||||||||||||||||||||||||| |  || ||||||||||||||||    
T  12257996 catacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttcaaccaccacatgtaatatgattttactttatct 12257897  T
Q  297 a 297  Q
    |    
T  12257896 a 12257896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 12265388 - 12265288
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |||||| ||||||||||  | || ||||||||| || | || ||||||||||||||||||||||||| |  || ||||||||||||||||    
T  12265388 catacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttcaaccaccacatgtaatatgattttactttatct 12265289  T
Q  297 a 297  Q
    |    
T  12265288 a 12265288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 42178031 - 42177956
Alignment:
Q  275 ggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttca 350  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||| |||||  ||||||| |||||||| |||||    
T  42178031 ggtatgtgattttactttatctaacaatagtggtataaaactttgacggttccgaaataacctgtcattctgttca 42177956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 171701 - 171817
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgt-gtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||| |||||||| |||| | || |||||| |||| || || |||||||| || ||||| ||||| | |  |||||| |||||||||||    
T  171701 acataaaagcgggcttgaccacca-ctgttgagtgccaaaactaaatacaacattactagcctttaaccatcacaaagaagttgatttcactttatctag 171799  T
Q  299 caatagtggtatagtact 316  Q
    ||||||||| | ||||||    
T  171800 caatagtggcaaagtact 171817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 34137508 - 34137408
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |  ||||||||||||||| | || ||||||||  |||| || || ||||||||||| ||||||||||| | |  |||||||||||| |||    
T  34137508 catacataacaaagggctcgaccaccaattatgagtaccaaagctaaaaacaacattactagcttttaaccaccacaatgaagatgattttactttgtct 34137409  T
Q  297 a 297  Q
    |    
T  34137408 a 34137408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 9922204 - 9922299
Alignment:
Q  205 aaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagca 300  Q
    |||||||||||||||||||   ||| ||||||||| |||| || || |||| ||| || ||||||||||| | |  |||||| |||||||||||||    
T  9922204 aaagcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagca 9922299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 10565594 - 10565519
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaaga 156  Q
    |||| |||||| | |||||||| | |||||  ||||||||||||| ||||| ||| |||||||||||||| |||||    
T  10565594 aaaccaaaatgaattatattaccacgaacaacgtaattgttgaagcacaaggcgttccataacaatcacggaaaga 10565519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 41665911 - 41665814
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || || ||||| || ||||||||||| | |  |||||| ||||||||||    
T  41665911 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatcta 41665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 7923984 - 7924103
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||| ||||||||||||| |||| || || |||||| |||| || || |||||||| || ||||||||||| | |  | |||| |||||||||||    
T  7923984 acataaaagagggctcgaccacc-actgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctag 7924082  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| | || | |||||||||    
T  7924083 caattgaggcacagtactttg 7924103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 13395986 - 13396105
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| ||  | || ||||| || ||||||||||| | |  |||||| ||||||||||     
T  13395986 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaatacagcattgctagcctttaaccaccacaaagaagttgatttcactttatctaa 13396084  T
Q  299 caatagtggtatagtactttg 319  Q
    || | |||| | |||||||||    
T  13396085 catttgtggcagagtactttg 13396105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 20496682 - 20496801
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||| ||||||||||||| |||| ||||| |||||| |||| || || |||||||| || ||||||||||| | |  | |||| |||||||||||    
T  20496682 acataaaagagggctcgaccacc-actgatgtgtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctag 20496780  T
Q  299 caatagtggtatagtactttg 319  Q
     ||| | || | |||||||||    
T  20496781 taattgaggcacagtactttg 20496801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 32567806 - 32567688
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||| ||||| |||| || || || |||||||| ||||||||||| | |  |||||| || ||||||||    
T  32567806 acataaaagcgggctcgaccacc-actgatgagtatcaaaactaaatacaacattgctagcttt-aaccaccacaaagaagttgatttcacattatctag 32567709  T
Q  299 caatagtggtatagtactttg 319  Q
    || | |||| | |||||||||    
T  32567708 catttgtggcaaagtactttg 32567688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 78 - 351
Target Start/End: Complemental strand, 11000614 - 11000341
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  11000614 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaagacgtgtcataacaatcacaaaaagatcacaatcctgtcaaaattac 11000515  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||||    
T  11000514 atcaaagataatcgatgctcatacataaaagcgggctcgaccaccaactgtgaataccaaaaataaagactatgttactagctttcaaccaccacaaggt 11000415  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||  |||||| ||||||||||||||||||||||| || |||| |||||| ||||||||| |||||||||||||    
T  11000414 atgaaattttaatttatctagcaatagtggtatagaacattgacggttctgaaataacatatcattccgttcat 11000341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 14439232 - 14439502
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||   |||||||||    
T  14439232 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcacaaccc---caaaattac 14439328  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  14439329 atcaaagataatcgatgcccataattaaaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaaccaccacaaggt 14439428  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
     |||||||||||||||||||||||||||| ||||| ||||||| | |||| ||||||  |||||||||||||||    
T  14439429 ttgtgattttactttatctagcaatagtgatatagaactttgacgattctgaaataatctgtcattccgttcat 14439502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 12645013 - 12645285
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||| |||||| | |||||||| |||||||  ||||||||||||| ||||| |||||||||||||||||| ||||| ||  ||||||||||| ||||    
T  12645013 aagaaaccaaaatgaattatattaccatgaacaacgtaattgttgaagcacaaggcgtgccataacaatcacggaaagagcaacatcctgtcaaa-ttac 12645111  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    | || |   ||||||| | ||||||| ||| |||||||||||||||| | |||||||||||| |||| || || ||||||||||| ||||||||||||||    
T  12645112 aacatagtcaatcgatacccatacatgaaaacgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagcttttaaccaccacaaggt 12645211  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    ||| |||||||||||||||| ||| ||||| |||| ||||||| ||||  |||||||| | ||||| |||||||    
T  12645212 atgagattttactttatctaacaaaagtggcatagaactttgacggtttctaaataacctatcatttcgttcat 12645285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 297
Target Start/End: Complemental strand, 33516419 - 33516229
Alignment:
Q  106 gaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataa 205  Q
    |||||| |||||||||  || ||||| ||||||| |||||||||||||| ||||  |||| || || |||||| ||||    |||||||| ||||||||     
T  33516419 gaacaccgtaattgttatagcacaaggcgtgccaaaacaatcacgaaaatatcaacatccagt-aagattacaacaaagtcgatcgatgctcatacatac 33516321  T
Q  206 aagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||||||||||||| | || ||||||||| |||| || ||||||||||||||||||||||||| || || |||||||||||||||||    
T  33516320 aagcgggctcgaccaccaattatgagtaccaaaagtaaagaccacgttactagctttcaaccaccacatggaatttgattttactttatcta 33516229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 15917164 - 15917348
Alignment:
Q  113 gtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataaaagcggg 212  Q
    |||||||||| |||| |||| |||||| |||||||| | |||||| | ||| ||||||| ||||||  | |     ||||||  ||||||||||||||||    
T  15917164 gtaattgttgcagtataagatgtgccaaaacaatcatggaaagattaaaattctgtcaagattacaaaatagtcggtcgatgttcatacataaaagcggg 15917263  T
Q  213 ctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||||||||| | || ||||||||| |||| || || ||||||||||||||||||||||| | || |||||||||||||||||    
T  15917264 ctcgaccaccaattatgagtaccaaaactaaagacaacattactagctttcaaccaccacaaagaatatgattttactttatcta 15917348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 326
Target Start/End: Original strand, 3400583 - 3400708
Alignment:
Q  201 cataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagca 300  Q
    |||||||| ||| ||||| ||||  |||||||| ||| | |||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||  |    
T  3400583 cataaaagtgggttcgactaccacatgtgtgtatcaacattaaaaactacattaatagctttcaaccaccacaaggtatatgattttactttatctaata 3400682  T
Q  301 atagtggtatagtactttgatggttc 326  Q
    | |||||||||| |||||||||||||    
T  3400683 acagtggtatagaactttgatggttc 3400708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 297
Target Start/End: Original strand, 40176147 - 40176365
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||| |||||| | |||||||| | |||||| |||||||||  || ||||| ||||| | |||||||||||||| | ||  | |  || || |||||    
T  40176147 aagaaactaaaatgaattatattaccaagaacaccgtaattgttatagcacaaggcgtgctaaaacaatcacgaaaaaaacaacaactagt-aagattac 40176245  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    | |||    |||| |||| |||||||| ||||||||||||||||||| | || || |||||| |||| || || |||||||||||||||||||||| ||     
T  40176246 aacaaggtcaatcaatgcccatacatacaagcgggctcgaccaccaattatgagttccaaaagtaaagaccacattactagctttcaaccaccacatgga 40176345  T
Q  278 atgtgattttactttatcta 297  Q
    || |||||||||||||||||    
T  40176346 atttgattttactttatcta 40176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 44022947 - 44023057
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||||| |||||| | |||||||||| || ||||| | || ||||||||| |||| || || |||||||||||||||||||||| ||||| ||||||    
T  44022947 aatcgatgcccatacaaacaagcgggctcaactaccaattatgagtaccaaaagtaaagaccacattactagctttcaaccaccacagggtatttgattt 44023046  T
Q  287 tactttatcta 297  Q
    |||||||||||    
T  44023047 tactttatcta 44023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 17765514 - 17765395
Alignment:
Q  190 cgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttac 289  Q
    |||||| |||||||||||| ||||||||||||||||| || ||||||||| |||| || || ||||||||||| |||| |||||| | |  |||||||||    
T  17765514 cgatgcccatacataaaagtgggctcgaccaccaactatgagtaccaaaactaaaaacaacattactagcttttaacccccacaaagaagatgattttac 17765415  T
Q  290 tttatctagcaatagtggta 309  Q
    ||| |||| |||| ||||||    
T  17765414 tttgtctaacaattgtggta 17765395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 3400510 - 3400558
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaag 125  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  3400510 gaagaaactaaaatggaatatattactatgaacaccgtaattgttgaag 3400558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 351
Target Start/End: Original strand, 15391738 - 15391892
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |||||| ||||||||||| | || ||||| ||| ||||  |  | ||||||||||||||||||||||||| ||  ||||| |||||||||    
T  15391738 catacataagagcgggttcgaccaccaattatgagtaccgaaactaaagtcagctttactagctttcaaccaccacaaggaataagatttaactttatct 15391837  T
Q  297 agcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    | |||| | |||| ||  ||||| | |||| |||| ||| |||| ||||| ||||    
T  15391838 aacaattgcggtagagagctttgtttgttcctaaacaacctgtcgttccgatcat 15391892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 351
Target Start/End: Complemental strand, 38604926 - 38604764
Alignment:
Q  189 tcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatttta 288  Q
    ||||||| ||||||   ||||||| ||||||||||| | ||||| |||||||||||  | || |||||||||||||||||||||||      ||||||||    
T  38604926 tcgatgcccatacaagcaagcgggttcgaccaccaattatgtgttccaaaaataaagtccacattactagctttcaaccaccacaaaaagcatgatttta 38604827  T
Q  289 ctttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||| || | |||  |||||||||  ||||| || ||| | |||| | |||||||||||||||    
T  38604826 ctttttccaacaactgtggtatagagctttgttgattcctgaatagcgtgtcattccgttcat 38604764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 42563115 - 42563157
Alignment:
Q  252 ttactagctttcaaccaccacaaggtatgtgattttactttat 294  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  42563115 ttactagctttcaaccaccacaaggaatatgattttactttat 42563157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 44473012 - 44473053
Alignment:
Q  256 tagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  44473012 tagctttcaaccaccacaaagaatatgattttactttatcta 44473053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 94 - 351
Target Start/End: Complemental strand, 35215019 - 35214762
Alignment:
Q  94 atatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgat 193  Q
    |||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  35215019 atatattactatgaacaccgtaattgttgaagcacaagatgtgtcataacaatcacgaaaagatcacaatcccgtcaaaattacatcaaagataatcgat 35214920  T
Q  194 gcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttacttta 293  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||    
T  35214919 gcacatagataaaagcgggctcgaccgccaactgtgtgtaccaaaaataaacaccacgtaactatctttcaaccatcacaaggtatgtgattttacttta 35214820  T
Q  294 tctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  35214819 tctagcaatagtggtatagaactttgatggttctgaaataacctgtcattccgttcat 35214762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 30696007 - 30695736
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  30696007 aagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaccctgtcaaaattac 30695908  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||||||||||||||||    
T  30695907 atcaaagatagtcaatgcacatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctggctttcaaccaccacaaggt 30695808  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  30695807 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 30695736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 11203294 - 11203566
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||  |||||| ||||  | ||||||||||    
T  11203294 gaagaaacaaaaatggaatatattactataaacactgtaattgttgaagcacaagacgtgccacaacaatcacataaagattacaacacagtcaaaatta 11203393  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||  ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  11203394 catcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaaccaccacaagg 11203493  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||  | |||||||||||    
T  11203494 tatttgattttactttatctaacaatagtggtatagaactttgatgattctgaaataatctatcattccgttc 11203566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 78 - 349
Target Start/End: Original strand, 33496024 - 33496294
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  33496024 aagaaacaaaaatggaatatattactatgaacactgtaatggttgaagcacaagacgtgccaaaacaatcacaaaaagattacaa-cctgtcaaaattac 33496122  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| ||||||| ||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  33496123 atcaaagatagtcaatgctcatacatagaagcgggttcgaccaccaactatgtgtaccaaaaataaagactatgttactaactttcaaccaccacaaggt 33496222  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||| ||||    
T  33496223 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttc 33496294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 29524410 - 29524138
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||   |||||| |||| ||||||||||| |    
T  29524410 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccacaacaatcatataaagattacaaccctgtcaaaataa 29524311  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| ||| || |||  |||||||  ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  29524310 catcaaagatattcaatgtccatacatggaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaaccaccacaagg 29524211  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| ||||||||||||||||| |||||||||||||  ||||||||| |||| ||||||| | |||||||||||    
T  29524210 tatttgattttactttatctaacaatagtggtatataactttgatgattctgaaataacctatcattccgttc 29524138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 7031680 - 7031410
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||  |||||| ||||  | ||||||||||    
T  7031680 gaagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcac--aaagattacaacacagtcaaaatta 7031583  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||  ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7031582 catcaaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaaaactatgttactagctttcaaccaccacaagg 7031483  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| |||||||||||||||||||| ||||||||||| ||| ||| | |||| ||||||| | |||||||||||    
T  7031482 tatttgattttactttatctagcagtagtggtatagaactatgacgattctgaaataacctatcattccgttc 7031410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 78 - 320
Target Start/End: Complemental strand, 12342891 - 12342649
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||| ||||||||||| ||    
T  12342891 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagattacaaccctgtcaaaataac 12342792  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||  ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  12342791 atcaaagatagtcaatgcccatacatggaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaaccactacaaggt 12342692  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttga 320  Q
    || ||||||||||||||||| |||||| ||||||  |||||||    
T  12342691 atttgattttactttatctaacaatagcggtataaaactttga 12342649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 86 - 349
Target Start/End: Complemental strand, 36801731 - 36801468
Alignment:
Q  86 aaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaa 185  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||| ||| ||||||||| ||||||| |||| |||||||| ||||||||||| |    
T  36801731 aaaatggaatatattactatgaacactgtgattgttgaaacacaagacgtaccaaaacaatcacaaaaagattacaaccctgtcaagattacatcaaaga 36801632  T
Q  186 taatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatt 285  Q
    || || |||| |||||||| ||||| ||||||||||||||| ||||||||||||||||| |||| |||| | |||||||||||||||||||||| |||||    
T  36801631 tagtcaatgctcatacatagaagcgtgctcgaccaccaactatgtgtaccaaaaataaagactatgttattggctttcaaccaccacaaggtatttgatt 36801532  T
Q  286 ttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||| ||| |||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  36801531 ttactttatctaacaagagtggtatagaactttgacgattctgaaataacctatcattccgttc 36801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 78 - 350
Target Start/End: Original strand, 19890155 - 19890426
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| |||||||||  || | ||||||||||||| |||||| |||||||||| |||| ||||| ||||||    
T  19890155 aagaaacaaaaatggaatatattactatgaacaccgtaattgttagagcataagacgtgccatagcaatcatgaaaagatcaaaatcttgtcagaattac 19890254  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||||||| | |||||||||||||||||||||||||||  |||||||||||| | |||| ||||| ||||||||||||||||||||||||||    
T  19890255 atcaaagtcaatcgatac-catacataaaagcgggctcgaccaccacatgtgtgtaccaacattaaagactacattactagctttcaaccaccacaaggt 19890353  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttca 350  Q
     ||||||||||||||||||| |||||||||||||  ||||||| ||||   ||||||| |||||||| |||||    
T  19890354 gtgtgattttactttatctaacaatagtggtataaaactttgacggtttcgaaataacctgtcattctgttca 19890426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 349
Target Start/End: Complemental strand, 53185191 - 53184930
Alignment:
Q  89 atggaatatattactatgaacactgtaatt-gttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaata 187  Q
    ||||||||||||||||||||||| ||| || ||||||| |||||  || |||||||||||||||| |||||| ||| ||| |||||||||| ||||   |    
T  53185191 atggaatatattactatgaacaccgtagtttgttgaagcacaaggtgtaccataacaatcacgaagagatcaaaattctgacaaaattacaacaaagtca 53185092  T
Q  188 atcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatttt 287  Q
    ||| |||  |||| ||||||||||||||||||| ||| | || ||||||||| |||| |||||   |||| |||||||||||||||||||||||||||||    
T  53185091 atcaatgtccatatataaaagcgggctcgaccatcaattatgagtaccaaaattaaagactacacaactaactttcaaccaccacaaggtatgtgatttt 53184992  T
Q  288 actttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||| |||||||||||||| |||||||   |||  |||||||||||||||||||||    
T  53184991 actttatctaacaatagtggtatagaactttgacaattccgaaataacatgtcattccgttc 53184930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 351
Target Start/End: Complemental strand, 11310862 - 11310590
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||| |||||| | |||||||| |||||||  |||||||| |||| | |||  ||| ||||||||||||  ||||| ||  ||||||||||| ||||    
T  11310862 aagaaaccaaaatgaattatattaccatgaacaacgtaattgtcgaagcataaggtgtgtcataacaatcactgaaagagcaacatcctgtcaaa-ttac 11310764  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    | || |  |||||||||| ||||||| |||||||| ||||||||||| | |||||||||||| |||| || || || |||||||||||||||||||||||    
T  11310763 aacatagttaatcgatgcccatacatgaaagcgggttcgaccaccaattatgtgtaccaaaattaaagaccacattgctagctttcaaccaccacaaggt 11310664  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    ||| |||||||||||||||| ||| ||||| |||| ||||||| ||||  | |||||| ||||||| |||||||    
T  11310663 atgagattttactttatctaacaaaagtggcatagaactttgacggtttcttaataacttgtcatttcgttcat 11310590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 297
Target Start/End: Complemental strand, 48570703 - 48570484
Alignment:
Q  78 aagaaacaaaaatggaatatatt-actatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||| |||||| | |||||| |||| |||||| |||||| ||  |||| ||| ||||||| |||||||||||||| ||||  |||| || || ||||    
T  48570703 aagaaactaaaatgaattatatttactaagaacaccgtaattattatagtataaggcgtgccaaaacaatcacgaaaatatcaacatccagt-aagatta 48570605  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    || ||||   ||||||||| |||||||| ||||||||||||||||||| | || |||||||||||||| || || ||| |||||||||||||||||| ||    
T  48570604 caacaaagtcaatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaaataaagaccacattattagctttcaaccaccacaggg 48570505  T
Q  277 tatgtgattttactttatcta 297  Q
     || |||||||||||||||||    
T  48570504 aatttgattttactttatcta 48570484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 1680786 - 1680621
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||| | ||||||| ||||||||  | ||||||||||| ||||| |||||||||||||||||  ||||| ||  |||||||| |||||||    
T  1680786 aagaaacaaaaatgaattatattattatgaacaacgaaattgttgaagcacaaggcgtgccataacaatcacagaaagagcaacatcctgtc-aaattac 1680688  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaa 244  Q
    | ||||   ||||||||| ||||||||||||||| |||||||||||| |  ||||||||||| ||||    
T  1680687 aacaaagtcaatcgatgcccatacataaaagcggactcgaccaccaattacgtgtaccaaaattaaa 1680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 50651883 - 50651797
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttacttta 293  Q
    |||||| ||||||||||| ||||  |||||||| |||| ||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  50651883 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttcaaccaccacaaggaataagattttacttta 50651797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 963698 - 963608
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||| | ||  |||||||| |||| ||||| ||||||||||||| ||||||||||| |  |||||||||||||||||    
T  963698 agcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatcta 963608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 297
Target Start/End: Original strand, 15312120 - 15312277
Alignment:
Q  140 taacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaa 239  Q
    ||||||||||| ||||| |||| ||  ||||| ||||||  | ||  | ||||| | ||||||||| || ||| |||||||||||   || ||||| |||    
T  15312120 taacaatcacggaaagaacacagtcaagtcaatattacaaaacaatcagtcgatacccatacataagagtgggttcgaccaccaaagatgagtaccgaaa 15312219  T
Q  240 ataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
     |||| || || ||||||||||||||||||||||||| || |||||||| ||||||||    
T  15312220 ctaaatacaacattactagctttcaaccaccacaaggaatatgattttagtttatcta 15312277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 35215069 - 35215015
Alignment:
Q  15 catgaagtttgttgagacagtattttgagttaaaaattgacataaggataatata 69  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| || |||||    
T  35215069 catgtagtttgttgagacaatattttgagttaaaaattgacataagaatgatata 35215015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 7312375 - 7312494
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgt-gtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||||||||||||||||| |||  | || |||||| |||| || || |||||||| || ||||||||||| | |  |||||| |||||||||||    
T  7312375 acataaaagcgggctcgaccacca-ctgacgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatctag 7312473  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| |||| | |||||||||    
T  7312474 caattgtggcacagtactttg 7312494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 17098477 - 17098321
Alignment:
Q  141 aacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaa 240  Q
    |||||||||| ||||| |||||||   |||||||||||  | ||  | ||||| | ||||||||| ||| || | ||||||||| | || |||| ||||     
T  17098477 aacaatcacggaaagaacacaatctactcaaaattacaaaacaatgagtcgatacgcatacataagagctggtttgaccaccaattatgagtactaaaac 17098378  T
Q  241 taaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||| ||  | ||||||| ||||||||||||||||| || ||||||||||| |||||    
T  17098377 taaagacatctttactagatttcaaccaccacaaggaatatgattttacttcatcta 17098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 351
Target Start/End: Original strand, 16178535 - 16178697
Alignment:
Q  189 tcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatttta 288  Q
    |||||||  |||||||| |||||| | ||||||||||| ||  |||| ||  |||| || || ||||||||||||||||||||||| | ||   |||| |    
T  16178535 tcgatgcctatacataagagcgggttagaccaccaactatgaataccgaagctaaaaacaacattactagctttcaaccaccacaatgaatagaatttaa 16178634  T
Q  289 ctttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||||| || || |||||||  ||  ||||| | |||| |||||||| |||||||||| ||||    
T  16178635 ctttatataacattagtggttgagagctttgtttgttcctaaataacctgtcattccgatcat 16178697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 3140447 - 3140547
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||  |||||| ||||||||||| | ||  |||||||| |||| ||||| |||||||||||||  ||| |||||  |  ||||||||||||||||    
T  3140447 catacatatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttcagtcacgacaagaaacatgattttactttatct 3140546  T
Q  297 a 297  Q
    |    
T  3140547 a 3140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 26771539 - 26771470
Alignment:
Q  189 tcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactag 258  Q
    ||||||| |||||||||||| ||||||||||||||| | || ||| ||||| |||| || || |||||||    
T  26771539 tcgatgctcatacataaaagtgggctcgaccaccaattatgagtatcaaaactaaaaacaacattactag 26771470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 34333357 - 34333257
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || ||  |||| || ||||||||||| | |  |||||| |||||||||||    
T  34333357 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaatacaacattgttagcctttaaccaccacaaagaagttgatttcactttatctag 34333259  T
Q  299 ca 300  Q
    ||    
T  34333258 ca 34333257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 2363875 - 2363994
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||| ||||||||||||| |||| || || |||||| |||| || || |||||||| || ||||||||||| | |  | |||| |||||||||||    
T  2363875 acataaaagagggctcgaccacc-actgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctag 2363973  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| | || | |||||||||    
T  2363974 caattgaggcacagtactttg 2363994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 7031926 - 7031990
Alignment:
Q  210 gggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    ||||||||||||||| | || ||||||||  |||||| ||| |||  ||||||||||||||||||    
T  7031926 gggctcgaccaccaattctgagtaccaaagctaaacattacattatgagctttcaaccaccacaa 7031990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 19920771 - 19920664
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||| ||||||||||||||||| ||| || || |||||| |||| || || || |||||||| ||||||||||| | |  |||||| ||||||||||     
T  19920771 acataagagcgggctcgaccacca-ctgatgggtgccaaaactaaatacaacatttctagcttttaaccaccacaacgcagttgatttcactttatctaa 19920673  T
Q  299 caatagtgg 307  Q
    |||| ||||    
T  19920672 caattgtgg 19920664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 18529985 - 18530257
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  18529985 gaagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaaaacgtgtcataacaattacgaaaagatcacaaccctgtcaaaatta 18530084  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||| |||||||||||||||||    
T  18530085 catcaaagataatcgatgcacatacataaaagcgggctcgaccaccaactatgtgtacaaaaaataaagactatgttactagttttcaaccaccacaagg 18530184  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | || | ||||||| | |||||| ||||    
T  18530185 tatgtgattttactttatctagcaatagtggtatagaactttgacgattttgaaataacctatcattcagttc 18530257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 37254234 - 37254507
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||||  ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  37254234 aagaaacaaaaatggaatatattactatgaaaaccgtaattattgaagcccaaaacgtgccataacaatcacgaaaagatcaaaatcctgtcaaaattac 37254333  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||||||| | |||||||||| ||||||||||||||||| | |||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  37254334 atcaaagtcaatcgatacccatacataaatgcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaggt 37254433  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||||||||||||||||||| |||| ||||||||| |||||||  ||||  ||||||| || |||||| |||||    
T  37254434 atgtgattttactttatctaacaattgtggtatagaactttgacagttccgaaataacctgccattccattcat 37254507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 78 - 350
Target Start/End: Original strand, 25618935 - 25619207
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||||    
T  25618935 aagaaacaaaaatggaatatattactataaacaacgtaattgttgaagcacaagacgtgtcataccaatcacgaaaagatcaaaatcctgtcagaattac 25619034  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||||||| | |||||||||||||||| || |||||||  |||||||||||| | |||| ||||| |||||||||||||||||||| |||||    
T  25619035 atcaaagtcaatcgatacccatacataaaagcgggttcaaccaccacatgtgtgtaccaacattaaagactacattactagctttcaaccaccataaggt 25619134  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttca 350  Q
    |||||||||||||||||||| |||||||||||||| |||||||   |||  ||||||| |||||||| |||||    
T  25619135 atgtgattttactttatctaacaatagtggtatagaactttgacaattccgaaataacctgtcattctgttca 25619207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 48394499 - 48394599
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |||||| ||||||||||| | || ||||| ||| |||| || || ||||||||||||||||||||||||| || |||||||| |||||||    
T  48394499 catacataatagcgggttcgaccaccaattatgagtaccgaaattaaagacaacattactagctttcaaccaccacaaggaatatgattttattttatct 48394598  T
Q  297 a 297  Q
    |    
T  48394599 a 48394599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 23911298 - 23911374
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagat 157  Q
    ||||||||||| ||||||||||||  |||||| |||||||||||  ||||||||||||| ||||||||| |||||||    
T  23911298 aaacaaaaatgaaatatattactaaaaacactataattgttgaaacacaagacgtgccaaaacaatcacaaaaagat 23911374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 41698694 - 41698602
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtat 279  Q
    ||||||||| |||||||| ||||||||||||||||||| | || ||||||||  |||| || || ||||||||||||| |||||||| |||||    
T  41698694 aatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttcagccaccacagggtat 41698602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 38890262 - 38890143
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||||||||| ||||||| ||| || || |||||| |||| || || |||||| | || ||||||||||| | |  |||||| |||||||||||    
T  38890262 acataaaagcgggctcaaccacca-ctgatgagtgccaaaattaaatacaacattactaacctttaaccaccacaaagaagttgatttcactttatctag 38890164  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| |||| | |||||||||    
T  38890163 caattgtggcaaagtactttg 38890143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 17720247 - 17720342
Alignment:
Q  205 aaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagca 300  Q
    |||||||||||||||||||   ||| ||||||||| |||| || || |||| ||| || ||||||||||| | |  |||||| |||||||||||||    
T  17720247 aaagcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagca 17720342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 29967573 - 29967647
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || |||||||| || |||||||||||    
T  29967573 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaaaacaacattactagcctttaaccaccacaa 29967647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 20535950 - 20535873
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttca 264  Q
    ||||||||| || ||||| ||||||||||||||||||| | || ||||||||  |||| || || |||| ||||||||    
T  20535950 aatcgatgcccaaacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagaccacattacgagctttca 20535873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 37919142 - 37919261
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||| |||||||||| ||| || ||||||||| |||| || || || ||||| || ||||||||||| | |  |||||| ||||||||||     
T  37919142 acataaaagcgggttcgaccacca-ctgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctaa 37919240  T
Q  299 caatagtggtatagtactttg 319  Q
    || | |||| | |||||||||    
T  37919241 catttgtggcagagtactttg 37919261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 350
Target Start/End: Complemental strand, 37192591 - 37192319
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  37192591 aagaaacaaaaatagaatatattactatgaacaccgtaattgttgaagtacaagacgtgccctaacaatcacgaaaagatcaaaatcctgtcagaattac 37192492  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||| ||| | |||||||||||||||||||||||||||  |||||||||||| | |||| ||||| ||||||||||||||||||||||||||    
T  37192491 atcaaagtcaattgatacgcatacataaaagcgggctcgaccaccacatgtgtgtaccaacattaaagactacattactagctttcaaccaccacaaggt 37192392  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttca 350  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  37192391 atgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacatgtcattccgttca 37192319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 78 - 345
Target Start/End: Original strand, 43387843 - 43388110
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||| ||||||||||||||    
T  43387843 aagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagattacaaccctgtcaaaattac 43387942  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||  ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||| |||||||||||||||||||    
T  43387943 atcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctaactttcaaccaccacaaggt 43388042  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattcc 345  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||    
T  43388043 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattcc 43388110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 81 - 349
Target Start/End: Complemental strand, 16918470 - 16918202
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||  | ||||||||||||||    
T  16918470 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagattacaacacagtcaaaattacatc 16918371  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||  ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||     
T  16918370 aaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaatactatgttactagctttcaaccaccacaaggtatt 16918271  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||| ||||| ||| ||| | |||| ||||||| | |||||||||||    
T  16918270 tgattttactttatctagcaatagtgatatagaactatgacgattctgaaataacctatcattccgttc 16918202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 77 - 294
Target Start/End: Complemental strand, 37298163 - 37297947
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||| ||| ||||||||||||    
T  37298163 gaagaaacaaaaatggaatatattactatgaacaccgtaatagttgaagcacaagaagtgccataacaatcgcgaaaagatcaaaattctgtcaaaatta 37298064  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||    ||||||| | |||||||||||||||||||||||||||| | |||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  37298063 catcaagtc-aatcgatactcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaagg 37297965  T
Q  277 tatgtgattttactttat 294  Q
    ||||||||||||||||||    
T  37297964 tatgtgattttactttat 37297947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 26206971 - 26206758
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||||| ||||  |||||||||||||    
T  26206971 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcacaagacatgccaaaacaatcacaaaaagattacaactctgtcaaaattac 26206872  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| ||||||||||||||||||||| ||||||| ||||||||| |||| ||| ||  ||||||||||||||||| |    
T  26206871 atcaaagatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtacaaaaaataaagactatgttgctgactttcaaccaccacaagtt 26206772  T
Q  278 atgtgattttactt 291  Q
    || |||||||||||    
T  26206771 atttgattttactt 26206758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 275
Target Start/End: Original strand, 17400586 - 17400785
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacg--tgccataacaatcacgaaaagatcacaatcctgtcaaaat 174  Q
    ||||||||||||||| | |||||||| |||||||  ||||||||||||| ||||| ||  || ||||||||||||  ||||| ||  || || ||||| |    
T  17400586 gaagaaacaaaaatgaattatattaccatgaacaacgtaattgttgaagcacaaggcgggtgtcataacaatcacagaaagagcaacatactatcaaa-t 17400684  T
Q  175 tacatcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    |||| ||||   ||| |||||||||||||||||||||||||||||| ||| | |||||| ||||| |||| || || |||||||||||||||||||||||    
T  17400685 tacaacaaagtcaatggatgcacatacataaaagcgggctcgaccaacaattatgtgtatcaaaattaaagaccacattactagctttcaaccaccacaa 17400784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 49094374 - 49094479
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||| ||| |||||||||    
T  49094374 gaagaaacaaaaatgaaatatattactataaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagattacaaccctctcaaaatta 49094473  T
Q  177 catcaa 182  Q
    ||||||    
T  49094474 catcaa 49094479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 51994281 - 51994161
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||||| |||||||| ||||||||||||||||||| | || ||||||||| |||| |  || ||||||||||||| | ||  || ||||| ||||||    
T  51994281 aatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagatcacattactagctttcagctac--cagggtatttgattt 51994184  T
Q  287 tactttatctagcaatagtggta 309  Q
    ||||||||||| |||| ||||||    
T  51994183 tactttatctaacaattgtggta 51994161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 239
Target Start/End: Original strand, 15568246 - 15568407
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||| |||||| | |||||||| |||||||  |||||||| |||| ||||| |||||||||||||||||| ||||| ||  || || || ||||||    
T  15568246 gaagaaaccaaaatgaattatattaccatgaacaacgtaattgtcgaagcacaaggcgtgccataacaatcacggaaagagcaacattctatc-aaatta 15568344  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaa 239  Q
    ||  | |   |||| |||  |||||||||||||||| ||||||||||| | ||||||||||||    
T  15568345 caatatagtcaatcaatgttcatacataaaagcgggttcgaccaccaattatgtgtaccaaaa 15568407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 28351374 - 28351473
Alignment:
Q  250 cgttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||| |||  |||| ||||  ||||| || ||||| |||||||||| ||| |||||    
T  28351374 cgttactagctttcaaccaccacaatgaatatgattttactttatctaacaaatgtggaatagagctttgttgcttcttgaataacatgttatttcgttc 28351473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 11909647 - 11909528
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||||||||||||||||| ||| || || |||||| |||| || || |||||||| || ||||||||||| | |  |||||| |||||||||||    
T  11909647 acataaaagcgggctcgaccacca-ctgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatctag 11909549  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| |||| | |||||||||    
T  11909548 caattgtggcacagtactttg 11909528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 16272123 - 16272175
Alignment:
Q  112 tgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatc 164  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  16272123 tgtaattgttgaagcacaagccgtgccataacaatcacgaaaagatcagaatc 16272175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 25560597 - 25560661
Alignment:
Q  112 tgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||| | ||| ||||||||||||    
T  25560597 tgtaattgttgaagcacaagacgtgctataacaatcacggaaagattaaaattctgtcaaaatta 25560661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 2490817 - 2490907
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||| ||||  ||||||||  ||| ||||| |||||| |||||| |||||||| || ||  ||||||||||||||||    
T  2490817 agcgggttcgaccaccaattgtgaataccaaaacgaaaaactacattactaactttcagccaccacagggaataagattttactttatcta 2490907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 4646548 - 4646503
Alignment:
Q  252 ttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||||||||||||||||| | || |||||||||||||||||    
T  4646548 ttactagctttcaaccaccacaaagaatatgattttactttatcta 4646503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 26059489 - 26059589
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || || ||||| || ||||||||||| | |  |||||| |||||||||||    
T  26059489 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaatacaacattgctagcctttaaccaccacaaagaagttgatttcactttatctag 26059587  T
Q  299 ca 300  Q
    ||    
T  26059588 ca 26059589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 51052078 - 51052185
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || || |||||| |||| || || |||||||  || ||||||||||| | |  |||||| |||||||||||    
T  51052078 acataaaagcgggctcgaccacc-actgatgagtgccaaaactaaatacaacattactagtctttaaccaccacaacgaagttgatttcactttatctag 51052176  T
Q  299 caatagtgg 307  Q
    |||| ||||    
T  51052177 caattgtgg 51052185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 6259415 - 6259534
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagc 299  Q
    ||||||||||||||||||||||||    || ||||||||| |||| || || || ||||| || | ||||||||| | |  |||||| ||||||||||||    
T  6259415 acataaaagcgggctcgaccaccagtgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttgatttcactttatctagc 6259514  T
Q  300 aatagtggtatagtactttg 319  Q
    | | |||| | |||||||||    
T  6259515 atttgtggcaaagtactttg 6259534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 6478131 - 6478214
Alignment:
Q  214 tcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||||| | || ||| ||||| |||| || || ||| ||||||| | ||||||||||| || |||||||||||||||||    
T  6478131 tcgaccaccaattatgagtatcaaaactaaaaacaacattattagcttttagccaccacaaggaatatgattttactttatcta 6478214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 25560708 - 25560745
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaa 224  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  25560708 aatcgatgctcatatataaaagcgggctcgaccaccaa 25560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 35540647 - 35540766
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||| ||||||||||||| |||| ||||| |||||| |||| || || |||||||| || ||||||||||| | |  | |||| |||||||||||    
T  35540647 acataaaagagggctcgaccacc-actgatgtgtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctag 35540745  T
Q  299 caatagtggtatagtactttg 319  Q
     ||| | || | |||||||||    
T  35540746 taattgaggcacagtactttg 35540766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 10929968 - 10929697
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  10929968 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaccctgtcaaaattac 10929869  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| |||| |||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||    
T  10929868 atcaaagatagtcaatgcccatacatagaagcaggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaaccaccacaaggt 10929769  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  10929768 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 10929697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 10577897 - 10577625
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| || ||||||||| ||||||| |||| |||||||||||||    
T  10577897 gaagaaacaaaaatggaatatattactatgaacactgcaattgttaaagcacaagacgtgtcaaaacaatcacaaaaagattacaaccctgtcaaaatta 10577798  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| ||| || |||| |||||||| |||||| |||||||||||||| ||||||||||||||||| |||| ||| || |||| ||||||||||||||    
T  10577797 catcaaagatagtcaatgcccatacatagaagcggcctcgaccaccaactatgtgtaccaaaaataaagactatgttgctggcttccaaccaccacaagg 10577698  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  10577697 tatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 10577625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 77 - 335
Target Start/End: Original strand, 214878 - 215136
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| || | ||| |||||||||    
T  214878 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattactaccctatcaaaatta 214977  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| ||| || |||| |||||||| ||| || |||||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||||||||    
T  214978 catcaaagatagtcaatgcccatacatagaagtggactcgaccaccaactatgtgtaccaaaaataaagactatgttgctggctttcaaccaccacaagg 215077  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataac 335  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||| | |||| |||||||    
T  215078 tatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataac 215136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 77 - 351
Target Start/End: Original strand, 11461889 - 11462162
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaaga-tcacaatcctgtcaaaatt 175  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  11461889 gaagaaacaaaaatggaatatattgctatgaacaccgtaattgatgaagcacaagacgtgccataacaatcacgaaaaaaatcaaaatcctgtcaaaatt 11461988  T
Q  176 acatcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaag 275  Q
    ||||||||   ||||||| | |||||||||||||||||||||||||||| | |||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  11461989 acatcaaagtcaatcgatacccatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaag 11462088  T
Q  276 gtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||||||||||||||||||| | |||||||  ||||| ||||| | |||||  ||||||| ||||||||| |||||    
T  11462089 gtatgtgattttactttatccaacaatagt--tatagaactttcacggttccgaaataacctgtcattccattcat 11462162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 82 - 345
Target Start/End: Complemental strand, 20883690 - 20883427
Alignment:
Q  82 aacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatca 181  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||    
T  20883690 aacaaaaatggaatatattactatgaacactttaattgttgaagcacaagacgtgccatatcaatcacgaaaagatcaaaaccctatcaaaattacatca 20883591  T
Q  182 aaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgt 281  Q
    ||   ||||||| | ||||||||||||||||||| ||   ||| | |||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  20883590 aagtcaatcgatacccatacataaaagcgggctctactggcaattatgtgtatcaaaattaaagactacattactagctttcaaccaccacaaggtatgt 20883491  T
Q  282 gattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattcc 345  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||  ||||||| |||||||||    
T  20883490 gattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattcc 20883427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 21630773 - 21630502
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||| ||||||| |||| ||||||||||||||    
T  21630773 aagacacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagacatgccaaaacaatcacaaaaagattacaaccctgtcaaaattac 21630674  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| ||||||| ||    
T  21630673 atcaaagatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaacaaccacaatgt 21630574  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || |||||||||||||||||||||||||| ||||| |||||||   |||| ||||||| | |||||| ||||    
T  21630573 atttgattttactttatctagcaatagtgatatagaactttgacaattctaaaataacctatcattctgttc 21630502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 17606996 - 17606727
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||| | |||||||||  |||||| ||||  |||||||||||||    
T  17606996 aagaaacaaaaatggaatatattactataaacactgtaattgttgaagcacaa--cgtgcaaaaacaatcacataaagattacaactctgtcaaaattac 17606899  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||    
T  17606898 atcaaagatagtcaatgctcatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaaccaccacaaggt 17606799  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||| ||||    
T  17606798 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttc 17606727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 81 - 349
Target Start/End: Complemental strand, 17579741 - 17579474
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||  | || |||||||||||    
T  17579741 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaacacagttaaaattacatc 17579642  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||  ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||| ||||     
T  17579641 aaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaacca-cacaacgtatt 17579543  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||||||||| ||| ||| | |||| ||||||| | |||||||||||    
T  17579542 tgattttactttatctagcaatagtggtatagaactgtgacgattctgaaataacctatcattccgttc 17579474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 81 - 349
Target Start/End: Complemental strand, 14514217 - 14513950
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||  || |||||||||||||||| |||||||||| || ||||||||| ||||||| ||||  | ||||||||||||||    
T  14514217 aaacaaaaatggaatatattactaaaaatactgtaattgttgaagcacaagacgtggcaaaacaatcacaaaaagattacaacacagtcaaaattacatc 14514118  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||  ||| || |||| || ||||| ||||||||||||||||||||| |||||||| |||||||| |||| ||||||| |||||||||||||||| ||||     
T  14514117 aaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtacc-aaaataaagactatgttactaactttcaaccaccacaaagtatt 14514019  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||||||||| ||| ||| | |||| ||||||| | |||||||||||    
T  14514018 tgattttactttatctagcaatagtggtatagaactgtgacgattctgaaataacctatcattccgttc 14513950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 34714199 - 34714028
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| || ||||||||| ||||||| |||| |||||||| |||||    
T  34714199 aagaaacaaaaatggaatatattacaatgaacactgtaagtgttgaagcacaagacgtggcaaaacaatcaccaaaagattacaaccctgtcaagattac 34714100  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacacta 249  Q
    |||||| ||| || |||| |||||| | |||||| |||||||||||||| ||||||||||||||||| ||||    
T  34714099 atcaaagatagtcaatgcccatacagagaagcggactcgaccaccaactatgtgtaccaaaaataaagacta 34714028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 15959367 - 15959259
Alignment:
Q  189 tcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatttta 288  Q
    ||||||| |||||||||||| ||||||||||||||| | || ||||||||| |||| || || |||||| |||| ||||||||||| | |  ||||||||    
T  15959367 tcgatgcccatacataaaagtgggctcgaccaccaattatgagtaccaaaactaaaaacaacattactaacttttaaccaccacaaagaagatgatttta 15959268  T
Q  289 ctttatcta 297  Q
    |||| ||||    
T  15959267 ctttgtcta 15959259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 13937305 - 13937395
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||| | ||  |||||||| |||| ||||| ||||||||||||| ||||||||||| |  |||||||||||||||||    
T  13937305 agcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatcta 13937395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 12429122 - 12429039
Alignment:
Q  252 ttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataac 335  Q
    ||||||||||||||| ||||||| | || ||||||||||||||||| ||   |||||||||  ||||| |||||| ||||||||    
T  12429122 ttactagctttcaactaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataac 12429039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 18651776 - 18651702
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    |||||| |||||| ||||||||||| | || ||||||||| ||||||| || |||  |||||| |||||||||||    
T  18651776 acataacagcgggttcgaccaccaattctgagtaccaaaactaaacacaacattatgagcttttaaccaccacaa 18651702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 17330621 - 17330666
Alignment:
Q  252 ttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| |||||||||||||||| | || |||||||||||||||||    
T  17330621 ttactaactttcaaccaccacaaagaatatgattttactttatcta 17330666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 32536485 - 32536590
Alignment:
Q  192 atgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactt 291  Q
    |||| |||||||||||| | ||||||||||||| | |  ||||||||| |||| || || ||| ||||||| |||||||| || | |  |||||||||||    
T  32536485 atgctcatacataaaagtgagctcgaccaccaattattagtaccaaaactaaaaacaacattaatagcttttaaccaccaaaaagaagatgattttactt 32536584  T
Q  292 tatcta 297  Q
    | ||||    
T  32536585 tgtcta 32536590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 21167823 - 21167942
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || || ||||| || | ||||||||| | |  || ||| |||||||||||    
T  21167823 acataaaagcgggctcgaccacc-actgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttggtttcactttatctag 21167921  T
Q  299 caatagtggtatagtactttg 319  Q
    || | |||| | |||||||||    
T  21167922 catttgtggcaaagtactttg 21167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 4548884 - 4548612
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| |||| |||||||||||||    
T  4548884 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgtcaaaacaatcacaaaaagattacaaccctgtcaaaatta 4548785  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||||||||||||||     
T  4548784 catcaaagatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctggctttcaaccaccacaaga 4548685  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  4548684 tatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 4548612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 78 - 349
Target Start/End: Original strand, 20002194 - 20002465
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  20002194 aagaaagaaaaatggagtatattaatatgaacaccgtaattgttgaagcacaagacgtgccataacaatcacgaaaagatcaagatcctgtcaaaattac 20002293  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||| ||||     |||||||||||||||||||||||    
T  20002294 atcaaagtcaatcgatactcatacataaaagcgggctcgaccaccaattgtgtgtaccaaaattaaagactaaacggctagctttcaaccaccacaaggt 20002393  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||||  ||||||| |||||||||||||    
T  20002394 atgtgattttactttatctaacaatagtggtatagaactttgacagttccgaaataacctgtcattccgttc 20002465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 24506294 - 24506023
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  24506294 aagaaacaaaaatggaatatattactatgaacactgtgattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaaccctgtcaaaattac 24506195  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||  |||||||| ||||||||||||||||||||| ||||||||||||||||| | || ||| || |||||||||||||| |||||    
T  24506194 atcaaagatagtcaatgtccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagattatgttgctggctttcaaccaccataaggt 24506095  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||| ||||| ||||||| | |||| ||||||| | |||||||||||    
T  24506094 atttgattttactttatctaacaatagtgatatagaactttgacgattctgaaataacctatcattccgttc 24506023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 12697288 - 12697560
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||  |||||  |||  |||||||||||||    
T  12697288 gaagaaacaaaaatggaatatattacgataaacactgtaattgttgaagcacaagacgtgccaaaacaatcacataaagactacagccctgtcaaaatta 12697387  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
     |||||  ||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  12697388 tatcaaggatagtcaatgcccatacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttgctagctttcaaccaccacaagg 12697487  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  12697488 tatttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattccgttc 12697560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 77 - 349
Target Start/End: Complemental strand, 55726257 - 55725986
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||| |||||| | |||||||| |||||||   |||||||||||| ||||| |||||||||||||||||| ||||| ||  ||||||||||| ||     
T  55726257 gaagaaaccaaaatgaattatattaccatgaacaacataattgttgaagcacaaggcgtgccataacaatcacggaaagagcaacatcctgtcaaa-ttg 55726159  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    || || |   ||||||||| ||| ||| |||||||||||||||||||| | ||| |||||||| |||| || || |||||||||||||||||||||||||    
T  55726158 caacatagtcaatcgatgcccatgcatgaaagcgggctcgaccaccaattatgtataccaaaattaaagaccacattactagctttcaaccaccacaagg 55726059  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||| |||||||||||||||| ||| ||||| |||| ||||||| ||||  |||||||| |||||||||||||    
T  55726058 tatgagattttactttatctaacaaaagtggcatagaactttgacggtttctaaataacttgtcattccgttc 55725986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 5142898 - 5143059
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| | |||||||||| ||| ||||||||||||||||    
T  5142898 aaacaaaaatggaatatattactatgaacaccgttattgttgaagcacaagacgtgccataacaattatgaaaagatcaaaattctgtcaaaattacatc 5142997  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgt-accaaaaat 241  Q
    |||   ||||||| | |||||||||||||||||||||||||||| | ||||| |||||||||    
T  5142998 aaagtcaatcgatacccatacataaaagcgggctcgaccaccaattatgtgtaaccaaaaat 5143059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 19468553 - 19468395
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| || |||| |||||||| ||||||||    
T  19468553 aaacaaaaacggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaaaattacaaccctgtcaagattacatc 19468454  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaa 239  Q
    ||| ||| || |||| |||||||| ||| ||| ||||||||||||| ||||||||||||    
T  19468453 aaagatagtcaatgcccatacatagaagtgggttcgaccaccaactatgtgtaccaaaa 19468395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 5147315 - 5147481
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||| || || |||| |||||||||    
T  5147315 aagaaacaaaaatggaatatattactatgaacaccgttattgttgaagcacaagacgtgccataacaatcaagaaaagaacaaaaccctgccaaaattac 5147414  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaa 244  Q
    |||| |   ||||||| | ||||||||||||||| ||| |||||||| | |||||||||||| ||||    
T  5147415 atcagagtcaatcgatacccatacataaaagcggactcaaccaccaattatgtgtaccaaaattaaa 5147481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 214 - 349
Target Start/End: Original strand, 8360712 - 8360847
Alignment:
Q  214 tcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagt 313  Q
    ||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||     
T  8360712 tcgaccaccaactatgtgtaccaaaaataaagactatgttactggctttcaaccaccataaggtatttgattttactttatctaacaatagtggtataga 8360811  T
Q  314 actttgatggttcttaaataacatgtcattccgttc 349  Q
    ||||||| | |||| ||||||| | |||||||||||    
T  8360812 actttgacgattctgaaataacctatcattccgttc 8360847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 41973615 - 41973734
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||| |||| |||||||| ||||    
T  41973615 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaggattacaaccctgtcaagatta 41973714  T
Q  177 catcaaaaataatcgatgca 196  Q
    ||||||| ||| || |||||    
T  41973715 catcaaagatagtcaatgca 41973734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 8360603 - 8360704
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||| ||||||| |||| |||||||| ||||    
T  8360603 gaagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcacaagatgtgccaaaacaatcaccaaaagattacaaccctgtcaagatta 8360702  T
Q  177 ca 178  Q
    ||    
T  8360703 ca 8360704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 5148305 - 5148410
Alignment:
Q  246 actacgttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattcc 345  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||| ||||||| |||||  ||||||||||||| |||    
T  5148305 actacattactagctttcaaccaccacaaggtatgtgattttactttatctaacaataactgtatagaactttgacggttccgaaataacatgtcactcc 5148404  T
Q  346 gttcat 351  Q
    ||||||    
T  5148405 gttcat 5148410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 297
Target Start/End: Complemental strand, 2822701 - 2822482
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    |||||||| |||||| |||||||||  | ||| |  |||||||||  || ||||| ||||||| |||||||||||||||| ||  |||| || || ||||    
T  2822701 gaagaaactaaaatgaaatatattaacaagaatatcgtaattgttatagcacaaggcgtgccaaaacaatcacgaaaagaacaacatccagt-aagatta 2822603  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    || ||||   ||||||||  |||||||| ||||||||||||||| ||||| || ||||||||| |||| |  || ||||||||||||||||||||||  |    
T  2822602 caacaaagtcaatcgatgtccatacatacaagcgggctcgaccatcaactatgagtaccaaaagtaaagaacacattactagctttcaaccaccacagag 2822503  T
Q  277 tatgtgattttactttatcta 297  Q
     || |||||| ||||||||||    
T  2822502 aatttgatttcactttatcta 2822482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 54483714 - 54483604
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||||| |||||||| ||||||| ||||||||||| | || ||||||||  |||| || || ||||||||||||| |||||||||||||| ||||||    
T  54483714 aatcgatgcccatacatacaagcggggtcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttcagccaccacaaggtatttgattt 54483615  T
Q  287 tactttatcta 297  Q
    |||||||||||    
T  54483614 tactttatcta 54483604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 48311675 - 48311785
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||| | |||||||| ||||||||||||||||||| | || ||||||||| |||| || || ||||||||||||| ||| ||||  |||| ||||||    
T  48311675 aatcgatacccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagaccacattactagctttcagccatcacagagtatttgattt 48311774  T
Q  287 tactttatcta 297  Q
    |||||||||||    
T  48311775 tactttatcta 48311785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 19740585 - 19740485
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||  |||||| || |||||||| | || ||||||||| |||| || || ||||||||||||| ||||||||||| || ||||||||||||||||    
T  19740585 catacatatgagcgggttcaaccaccaattatgagtaccaaaagtaaaaacaacattactagctttcagccaccacaaggaatatgattttactttatct 19740486  T
Q  297 a 297  Q
    |    
T  19740485 a 19740485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 351
Target Start/End: Original strand, 48241966 - 48242127
Alignment:
Q  189 tcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgatttta 288  Q
    ||||||| ||||||||| |||||  || |||||||||| ||  |||| ||  |||| || || |||||| |||||||||| ||||||| || ||||||||    
T  48241966 tcgatgcccatacataagagcggattcaaccaccaactatgaataccgaagctaaaaacaacattactaactttcaaccaacacaaggaatatgatttta 48242065  T
Q  289 ctttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    ||||||||| ||   |||||  ||  ||||| | |||||||||||||||||||||||| ||||    
T  48242066 ctttatctaacatatgtggt-gagagctttgtttgttcttaaataacatgtcattccgatcat 48242127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 5790639 - 5790511
Alignment:
Q  191 gatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttact 290  Q
    ||||| ||||||||| |||||| ||||||||||||| ||  |||| ||  ||||||| || ||||||||||||||||||||||| | ||  ||||| |||    
T  5790639 gatgcccatacataagagcgggttcgaccaccaactatgaataccgaagctaaacacaacattactagctttcaaccaccacaacgaataggatttaact 5790540  T
Q  291 ttatctagcaatagtggtatagtactttg 319  Q
    | ||||| || | |||||| || ||||||    
T  5790539 tgatctaacagttgtggtagagaactttg 5790511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 36223624 - 36223534
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||  ||||  |||||||| |||| ||||| ||||||||||||| | | ||||||| || |||||||||||||||||    
T  36223624 agcgggttcgaccaccagttgtgaataccaaaactaaaaactacattactagctttcagctatcacaaggaatatgattttactttatcta 36223534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 297
Target Start/End: Complemental strand, 17402344 - 17402131
Alignment:
Q  84 caaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaa 183  Q
    |||||||| | |||||||| | | |||  |||||||||  || |||||  |||||| ||||||||| ||||||||| | ||||||||| ||||||         
T  17402344 caaaaatgaattatattaccacggacaacgtaattgttacagcacaaggtgtgccaaaacaatcactaaaagatcaaagtcctgtcaagattacaaactt 17402245  T
Q  184 aataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtga 283  Q
       | ||||||| ||| |||||||||||||||||||||||| | || ||||||||   ||  || || |||||||| || ||| ||||||| | |  |||    
T  17402244 gtcagtcgatgctcatgcataaaagcgggctcgaccaccaattatgagtaccaaagtgaactacaacattactagcctttaactaccacaaagaagatga 17402145  T
Q  284 ttttactttatcta 297  Q
    ||||||||||||||    
T  17402144 ttttactttatcta 17402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 15739819 - 15739938
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || || ||||| || | ||||||||| | |  |||||| |||||||||||    
T  15739819 acataaaagcgggctcgaccacc-actgttgagtaccaaaactaaatacaacattgctagcctttagccaccacaaagaagttgatttcactttatctag 15739917  T
Q  299 caatagtggtatagtactttg 319  Q
    || | |||| | |||||||||    
T  15739918 catttgtggcaaagtactttg 15739938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 46145280 - 46145370
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||| | ||  |||||||| |||| ||||| |||||| |||||| ||| || |||| |  |||||||||||||||||    
T  46145280 agcgggttcgaccaccaattatgaataccaaaactaaaaactacattactaactttcatccatcataaggaacatgattttactttatcta 46145370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 160233 - 160114
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||| ||||||||||||| |||| ||| | |||||| |||| || || |||||||| || ||||||||||| | |  | |||| |||||||||||    
T  160233 acataaaagagggctcgaccacc-actgatgtttgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttaatttcactttatctag 160135  T
Q  299 caatagtggtatagtactttg 319  Q
     ||| |||| | |||||||||    
T  160134 taattgtggcacagtactttg 160114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 78 - 349
Target Start/End: Complemental strand, 33386038 - 33385767
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||| |||| |||||||| |||||    
T  33386038 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcataagacgtgccaaaacaatcacaaaaagattacaaccctgtcaagattac 33385939  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    |||||| ||| || |||| |||||||| ||||||||||||| ||||||| ||||||||||||||||| |||| ||||||  |||||||||||||||||||    
T  33385938 atcaaagatagtcaatgcccatacatagaagcgggctcgactaccaactatgtgtaccaaaaataaagactatgttactgactttcaaccaccacaaggt 33385839  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    || ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||| ||||    
T  33385838 atttgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacctatcattctgttc 33385767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 78 - 351
Target Start/End: Complemental strand, 18359754 - 18359481
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||| |||| ||| |||||||||||||    
T  18359754 aagatacaaaaatggaatatattactatgaataccgtaattgttgaagcacaagacgtgccataacaattacgaaaatatcaaaattctgtcaaaattac 18359655  T
Q  178 atcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggt 277  Q
    ||||||   ||| ||| | ||||||||||||||| ||||| || ||| | |||||||||||| |||| ||||| ||||||||||||||||||||||| ||    
T  18359654 atcaaagtcaattgatacccatacataaaagcggactcgatcatcaattatgtgtaccaaaattaaagactacattactagctttcaaccaccacaaagt 18359555  T
Q  278 atgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttcat 351  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||| |||||||||||||||    
T  18359554 atgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttcat 18359481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 349
Target Start/End: Complemental strand, 8300843 - 8300575
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||  | ||||||||||||||    
T  8300843 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaacacagtcaaaattacatc 8300744  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||  ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||     
T  8300743 aaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagctttcaaccaccacaaggtatt 8300644  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||||||||||||||||||||||||||||||| ||| ||| | || | ||||||| | |||||||||||    
T  8300643 tgattttactttatctagcaatagtggtatagaactgtgacgattatgaaataacctatcattccgttc 8300575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 349
Target Start/End: Original strand, 10773930 - 10774198
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| | || |||||||| ||||||||    
T  10773930 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcaccaaaagattagaaccctgtcaagattacatc 10774029  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||| ||| |  |||| |||||| | ||||||| ||||||||||||| ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||     
T  10774030 aaagatagttaatgcccatacagagaagcgggttcgaccaccaactatgtataccaaaaataaagactatgttactggctttcaaccaccacaaggtatt 10774129  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||||||||||||||||| |||||||||||||| ||||||| | |||| ||||||| | |||||||||||    
T  10774130 tgattttactttatctaacaatagtggtatagaactttgacgattctgaaataacttatcattccgttc 10774198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 77 - 349
Target Start/End: Original strand, 27766518 - 27766790
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaatta 176  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| || ||||||||| ||||||| |||| |||||||||||||    
T  27766518 gaagaaataaaaatggaatatattactatgaacattgtaattgttgtagcacaagacgtgtcaaaacaatcacaaaaagattacaaccctgtcaaaatta 27766617  T
Q  177 catcaaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaagg 276  Q
    ||||||| ||| || |||| ||| |||| ||||||||||||||||||||| | ||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  27766618 catcaaagatagtcaatgcccatgcatagaagcgggctcgaccaccaactatctgtaccaaaaataaagactatgttgctagctttcaaccaccacaagg 27766717  T
Q  277 tatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    |||  |||||||||||||||| |||||||| ||||| ||||||| | |||| ||||||| | |||||||||||    
T  27766718 tattcgattttactttatctaacaatagtgatatagaactttgacgattctgaaataacctatcattccgttc 27766790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 81 - 349
Target Start/End: Complemental strand, 25858085 - 25857817
Alignment:
Q  81 aaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatc 180  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||  | ||||||||||||||    
T  25858085 aaacaaaaatgtaatatattactaaaaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagattacaacacagtcaaaattacatc 25857986  T
Q  181 aaaaataatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatg 280  Q
    ||  ||| || |||| || ||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||     
T  25857985 aaggatagtcaatgcccaaacatagaagcgggctcgaccaccaactatgtgtaccaaaaataaagactatgttactagcgttcaaccaccacaaggtatt 25857886  T
Q  281 tgattttactttatctagcaatagtggtatagtactttgatggttcttaaataacatgtcattccgttc 349  Q
    ||| |||||||||||||||||||||||||||| ||| ||| | |||| ||||||| | |||||||||||    
T  25857885 tgagtttactttatctagcaatagtggtatagaactgtgacgattctgaaataacctatcattccgttc 25857817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 27795068 - 27795178
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||||| |||||||| ||||||||||||||||||| | || ||||||||  |||| || || |||| |||||||| |||||||| ||||| ||||||    
T  27795068 aatcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagaccacattacgagctttcagccaccacagggtatttgattt 27795167  T
Q  287 tactttatcta 297  Q
    |||||||||||    
T  27795168 tactttatcta 27795178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 26019606 - 26019445
Alignment:
Q  113 gtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattacatcaaaaataatcgatgcacatacataaaagcggg 212  Q
    |||||||||| || |||||  |||||| |||||||||| |||||||| |||  |||||| |||||| ||||   | ||||||| |||||||||||| ||     
T  26019606 gtaattgttgcagcacaaggtgtgccaaaacaatcacggaaagatcaaaattttgtcaatattacaacaaagtcagtcgatgcccatacataaaagtgga 26019507  T
Q  213 ctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaa 274  Q
    |||||||||||| | ||  | |||||| |||| | ||| |||||| ||||||||||||||||    
T  26019506 ctcgaccaccaattatgcattccaaaattaaaaattacattactaactttcaaccaccacaa 26019445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 26072488 - 26072588
Alignment:
Q  197 catacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatct 296  Q
    ||||||||| |||||| ||||||||||| | || ||| | ||| |||| || || ||||||||||||||||||||||||| ||  |||||||||||||||    
T  26072488 catacataagagcgggttcgaccaccaattatgagtatcgaaactaaagacaacattactagctttcaaccaccacaaggaataagattttactttatct 26072587  T
Q  297 a 297  Q
    |    
T  26072588 a 26072588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 319
Target Start/End: Original strand, 12824797 - 12824916
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||||||||||||||||| ||| || || |||||| |||| || || |||||||| || ||||||||||| | |  |||||| |||||||||||    
T  12824797 acataaaagcgggctcgaccacca-ctgatgagtgccaaaactaaatacaacattactagcctttaaccaccacaacgaagttgatttcactttatctag 12824895  T
Q  299 caatagtggtatagtactttg 319  Q
    |||| |||||| | |||||||    
T  12824896 caattgtggtacaatactttg 12824916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 8941943 - 8941856
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttat 294  Q
    |||||| ||||||||||| | ||  |||||||| |||| ||||| ||||||||||||| |||||||||||||  |||||||| |||||    
T  8941943 agcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttcagccaccacaaggtacatgattttaatttat 8941856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 27166442 - 27166359
Alignment:
Q  252 ttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaataac 335  Q
    ||||||||||||||||||||||| | || ||||||||||||||||| ||   |||||||||  ||||| |||||| ||||||||    
T  27166442 ttactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataac 27166359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 32228409 - 32228499
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| |||| |||||| | || ||||||||| |||| || || |||||||||||||||||||||||   || |||||||||||||||||    
T  32228409 agcgggttcgatcaccaattatgagtaccaaaactaaaaacaacattactagctttcaaccaccacaaaaaatatgattttactttatcta 32228499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 33169263 - 33169353
Alignment:
Q  207 agcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||||| ||||||||||| | |   |||||||| |||| ||||| ||||||||||||| ||||||||||| |  |||||||||||||||||    
T  33169263 agcgggttcgaccaccaattataaataccaaaactaaaaactacattactagctttcatccaccacaaggaacatgattttactttatcta 33169353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 18148230 - 18148149
Alignment:
Q  250 cgttactagctttcaaccaccacaaggtatgtgattttactttatctagcaatagtggtatagtactttgatggttcttaaa 331  Q
    ||||||||||||||||||||||||| |  | ||||||||||||||||| ||   |||| ||||  ||||| |||||||||||    
T  18148230 cgttactagctttcaaccaccacaaagagtatgattttactttatctaacatatgtggaatagagctttgttggttcttaaa 18148149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 27117703 - 27117587
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgt-gtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||| ||||||||||||| |||| | || |||||| |||| || || |||||||| || ||||||||||| | |  |||||| |||||||||||    
T  27117703 acataaaagcaggctcgaccacca-ctgttgagtgccaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttatctag 27117605  T
Q  299 caatagtggtatagtact 316  Q
    |||| |||| | ||||||    
T  27117604 caattgtggcaaagtact 27117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 12820491 - 12820384
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || || |||||| |||| || || |||| ||| || ||||||||||| | |  |||||| |||||||||||    
T  12820491 acataaaagcgggctcgaccacc-actgatgagtgccaaaactaaatacaacattaccagcctttaaccaccacaacgaagttgatttcactttatctag 12820393  T
Q  299 caatagtgg 307  Q
    |||| ||||    
T  12820392 caattgtgg 12820384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 17106817 - 17106685
Alignment:
Q  187 aatcgatgcacatacataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattt 286  Q
    ||||||||  ||||||||| |||||| ||||||||||||| ||  || | ||  ||||||| || |||||| ||||||||||||||||   ||  |||||    
T  17106817 aatcgatgtccatacataagagcgggttcgaccaccaactatgaatatcgaagctaaacacaacattactatctttcaaccaccacaacaaataggattt 17106718  T
Q  287 tactttatctagcaatagtggtatagtactttg 319  Q
     |||||||||| || | |||||| || ||||||    
T  17106717 aactttatctaacagttgtggtagagaactttg 17106685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 25824609 - 25824709
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagc 299  Q
    |||| ||||||||||||||||||| |  || ||||||||| |||| || || |||| ||| || ||||||||||| | |  |||||| ||||||||||||    
T  25824609 acatgaaagcgggctcgaccaccaccgatgagtaccaaaactaaatacaacattacaagcctttaaccaccacaaagaagttgatttcactttatctagc 25824708  T
Q  300 a 300  Q
    |    
T  25824709 a 25824709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 42927729 - 42927829
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagc 299  Q
    ||||||||| ||||||||||||||| | || ||| ||||  |||| || || |||| |||||| ||||||||||| | |  |||||| ||||||||||||    
T  42927729 acataaaagtgggctcgaccaccaattatgagtatcaaagctaaatacaacattacgagcttttaaccaccacaaagaagatgatttaactttatctagc 42927828  T
Q  300 a 300  Q
    |    
T  42927829 a 42927829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 31641360 - 31641455
Alignment:
Q  205 aaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctagca 300  Q
    |||||||||||||||||||   ||| ||||||||| |||| || || |||| ||| || ||||||||||| | |  |||||| |||||||||||||    
T  31641360 aaagcgggctcgaccaccactggtgagtaccaaaactaaatacaacattacaagcctttaaccaccacaacgaagttgatttcactttatctagca 31641455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 19255665 - 19255568
Alignment:
Q  200 acataaaagcgggctcgaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    |||| |||||||||||||||||||| | || ||||||||| |||| || || |||  || ||| ||||||||||| | |  |||||| ||||||||||    
T  19255665 acatgaaagcgggctcgaccaccaaatatgagtaccaaaactaaatacaacattatgaggttttaaccaccacaaagaagatgatttgactttatcta 19255568  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 23237981 - 23238081
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||| || || || ||||| || ||||||||||| | |  |||||| || ||||||||    
T  23237981 acataaaagcgggctcgaccacc-actgatgagtaccaaaactaaaaacaacattgctagcctttaaccaccacaaagaagttgatttcacattatctag 23238079  T
Q  299 ca 300  Q
    ||    
T  23238080 ca 23238081  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 30732856 - 30732749
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||| ||||||||||||| ||| || || |||||| |||| || || |||||||  || ||||||||||| | |  |||||| |||||||||||    
T  30732856 acataaaagcaggctcgaccacca-ctgatgagtgccaaaactaaatacaacattactagtctttaaccaccacaacgaagttgatttcactttatctag 30732758  T
Q  299 caatagtgg 307  Q
    |||| ||||    
T  30732757 caattgtgg 30732749  T

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Target: scaffold0178 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 16968 - 16865
Alignment:
Q  78 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagatcacaatcctgtcaaaattac 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  16968 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcacaagacgtgccgtaacaatcacgaaaagatcaaaatcctgtcagaattac 16869  T
Q  178 atca 181  Q
    ||||    
T  16868 atca 16865  T

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Target: scaffold0472 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 7475 - 7395
Alignment:
Q  77 gaagaaacaaaaatggaatatattactatgaacactgtaattgttgaagtacaagacgtgccataacaatcacgaaaagat 157  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  7475 gaagaaacaaaaatgaaatatattattatgaacactgtaattgttgaagcacaagacgtgccaaaacaatcacaaaaagat 7395  T

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Target: scaffold0161 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 6535 - 6454
Alignment:
Q  216 gaccaccaactgtgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatcta 297  Q
    ||||||||| | || ||||||||| |||| || || ||||||||||||||||||||||| | ||  ||||||||||||||||    
T  6535 gaccaccaattttgagtaccaaaactaaatacaacattactagctttcaaccaccacaatgaataagattttactttatcta 6454  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 11747 - 11628
Alignment:
Q  200 acataaaagcgggctcgaccaccaactg-tgtgtaccaaaaataaacactacgttactagctttcaaccaccacaaggtatgtgattttactttatctag 298  Q
    |||||||||||||||||||||||| ||| || ||  ||||| |||| || || |||||||| || ||||||||||| | |  |||||| |||||||||||    
T  11747 acataaaagcgggctcgaccacca-ctgatgagtgacaaaactaaatacaacattactagcctttaaccaccacaaagaagttgatttcactttatctag 11649  T
Q  299 caatagtggtatagtactttg 319  Q
     ||| |||| | |||||||||    
T  11648 aaattgtggcaaagtactttg 11628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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