View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_17 (Length: 347)
Name: NF2663_low_17
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 2232033 - 2231701
Alignment:
| Q |
1 |
attctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatcttcagttattcctctaaatggtcccatagctg |
100 |
Q |
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| T |
2232033 |
attctaacaccagtacaaattgcacaaatccaatcttgtttataaaattcaagtcttcctttgaaatcttcagttattcctctaaatggtcccatagctg |
2231934 |
T |
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| Q |
101 |
aatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcaccatatattatgaaaatgtataatggaaataaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
2231933 |
aatagagaatgatttcttgagatatatgaactatagagctattcattcaattcaagtctatgatcaccatatattatgaaaacgtataatggaaatgaga |
2231834 |
T |
|
| Q |
201 |
caaaaaataca-nnnnnnnagataatccacaagcatccctctatattatgttcgaggatttctcagacactaaatgtggacatctcttccatttgaaccg |
299 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231833 |
caaaaaatacattttttttagataatccacaagcatccctctatattatgttcgaggatttctcagacactaaatgtggacatctcttccatttgaaccg |
2231734 |
T |
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| Q |
300 |
gtattatgtttcactacattgcataggactatt |
332 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2231733 |
gtattatgtttcactacattgcataggactatt |
2231701 |
T |
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