View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2663_low_19 (Length: 327)

Name: NF2663_low_19
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2663_low_19
NF2663_low_19
[»] chr2 (1 HSPs)
chr2 (13-317)||(2410780-2411072)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 2411072 - 2410780
Alignment:
Q  13 gaaatgaacccttgaataccgtttcttttattctcttactaccagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatc 112  Q
    |||| ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411072 gaaaagaacccttgaataccgtttcttttattctcttac---cagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatc 2410976  T
Q  113 taaacttgttgttacaaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgccta 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||        ||||||||||||||||||||||||||||||||||    
T  2410975 taaacttgttgttacaa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaataatgtcagaaaatcgattcttgccta 2410885  T
Q  213 taattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410884 taattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctga 2410785  T

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