View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_20 (Length: 316)
Name: NF2663_low_20
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 7217524 - 7217239
Alignment:
| Q |
19 |
ttatcatctgcaaaatttgattttgatgaaaatagaataatggt-ttcnnnnnnnnatgaatttattcgcttttgagttaggtttataggtattatcatc |
117 |
Q |
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| T |
7217524 |
ttatcatctgcaaaatttgattttgatgaaaatagaactattttattttattttttatgaatttattcgcttttgagttaggtttataggtattatcatc |
7217425 |
T |
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| Q |
118 |
atcatcaaaatttgattttgatgcaaaaggaataacgggtttttgttttgtataattttatgtgttaaacctccaatttctagggaagtggcccctagtt |
217 |
Q |
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| T |
7217424 |
atcatcaaaatttgactttgatgcaaaaggaataacgggtttttgttttgtataattttatgtgttaaacctccaatttctagggaagtggcccctagtt |
7217325 |
T |
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| Q |
218 |
ttctggagtttggtcgggatgtcagtaaagtctgatcaattgttttagctaagaatcaaactcgggttctcctaaatgattagtct |
303 |
Q |
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| T |
7217324 |
ttctggagtttggtcgggatgtcagtaaagtctgatcaattgttttagctaagaatcaaactcgggttctcctgaatgattagtct |
7217239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 7217638 - 7217598
Alignment:
| Q |
19 |
ttatcatctgcaaaatttgattttgatgaaaatagaataat |
59 |
Q |
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| T |
7217638 |
ttatcatcttcaaaatttgattttgatgataagagaataat |
7217598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 7217674 - 7217611
Alignment:
| Q |
74 |
atgaatttattcgcttttgagttaggtttataggtattatcatcatcatcaaaatttgattttgatg |
140 |
Q |
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| T |
7217674 |
atgaatttaatctcttttgactttggtttattggtattat---catcttcaaaatttgattttgatg |
7217611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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