View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2663_low_21 (Length: 304)
Name: NF2663_low_21
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_21 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 26614199 - 26613907
Alignment:
| Q |
13 |
aaaatagtgattacattacataa---tcaaattgagaagcacaacaatgagttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaaga |
109 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26614199 |
aaaatagtgactacattaaataacaatcaaattgagaagcacaa--atgaattgtgtctaaatagccaagacaagtccaggaagtgacctacgataaaga |
26614102 |
T |
|
| Q |
110 |
tcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26614101 |
tcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatact |
26614002 |
T |
|
| Q |
210 |
ctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagcttgtccttcccacccctcagttatcacacaatcaccaatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26614001 |
ctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagcttgtccttcccacccctcagttatcacacaatcaccaatt |
26613907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 68 - 304
Target Start/End: Complemental strand, 26629118 - 26628882
Alignment:
| Q |
68 |
taaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacctta |
167 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629118 |
taaatagctaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacctta |
26629019 |
T |
|
| Q |
168 |
atggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagcttg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629018 |
atggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagcttg |
26628919 |
T |
|
| Q |
268 |
tccttcccacccctcagttatcacacaatcaccaatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26628918 |
tccttcccacccctcagttatcacacaatcaccaatt |
26628882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 60 - 304
Target Start/End: Complemental strand, 26649675 - 26649431
Alignment:
| Q |
60 |
gttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26649675 |
gttgtgtctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
26649576 |
T |
|
| Q |
160 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26649575 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaa |
26649476 |
T |
|
| Q |
260 |
taagcttgtccttcccacccctcagttatcacacaatcaccaatt |
304 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
26649475 |
taagcttgtccttcccaaccttcagttatcacacaatcaccaatt |
26649431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 60 - 304
Target Start/End: Complemental strand, 26717117 - 26716873
Alignment:
| Q |
60 |
gttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26717117 |
gttgtgtctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
26717018 |
T |
|
| Q |
160 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26717017 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaa |
26716918 |
T |
|
| Q |
260 |
taagcttgtccttcccacccctcagttatcacacaatcaccaatt |
304 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
26716917 |
taagcttgtccttcccaaccttcagttatcacacaatcaccaatt |
26716873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 66 - 304
Target Start/End: Complemental strand, 26637605 - 26637367
Alignment:
| Q |
66 |
tctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacct |
165 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26637605 |
tctaaataggtaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccactt |
26637506 |
T |
|
| Q |
166 |
taatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagct |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637505 |
taatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaacatgaacccaataagct |
26637406 |
T |
|
| Q |
266 |
tgtccttcccacccctcagttatcacacaatcaccaatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637405 |
tgtccttcccacccctcagttatcacacaatcaccaatt |
26637367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University