View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_22 (Length: 303)
Name: NF2663_low_22
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 11064957 - 11064700
Alignment:
| Q |
17 |
tgaagcacacagtagaggtatccagtaacaggaagtaggatcaactgcagttttaaaatgaacggagcatcagattatgcaatgtgtgtaaatcttcaat |
116 |
Q |
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| T |
11064957 |
tgaagcacacagtagaggtatccagtaacaggaagtaggatcaactgcagttttaaaatgaacggagcatcagattatgcaatgtgtgtaaatcttcaat |
11064858 |
T |
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| Q |
117 |
gtcatctttacacacatactttcttttatttgtctttaaaccatataaacataataaataatttaagttttgcggccgtctattgacattttttattgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11064857 |
gtcatctttacacacatactttcttttatttgtctttaaaccatataaacataataaataatttaagttttgcgcccgtctattgacattttttattgca |
11064758 |
T |
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| Q |
217 |
ccaat--gtgtaaattatgataaattttgattttgtttaaaattattttgaccatgat |
272 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11064757 |
ccaatgtgtgtaaattatgataaattttgattttgtttaaaattattttgatcatgat |
11064700 |
T |
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