View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2663_low_23 (Length: 289)
Name: NF2663_low_23
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_23 |
 | |
|
| [»] scaffold0217 (2 HSPs) |
| | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6504594 - 6504532
Alignment:
| Q |
1 |
aaaactcaagtaattaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6504594 |
aaaactcaagtaattaaattgtctaaaataattactttaagaaagcaaaatagaacgaaatct |
6504532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 6505428 - 6505490
Alignment:
| Q |
1 |
aaaactcaagtaattaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6505428 |
aaaactaatgtaattaaattgtctaaaataattattttaagaaagcaaaatagaacgaaatct |
6505490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7295198 - 7295136
Alignment:
| Q |
1 |
aaaactcaagtaattaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7295198 |
aaaactcaagtaattaaattgtctaaaataattattttaagaaagcaaaatagaacgaaatct |
7295136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7296406 - 7296468
Alignment:
| Q |
1 |
aaaactcaagtaattaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
7296406 |
aaaactcaagtaattaaattgtctaaaataattatttcaagaaagcaaaatagaacgaaatct |
7296468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 1880 - 1824
Alignment:
| Q |
7 |
caagtaattaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1880 |
caagtaattaaattgtctaaaataattattttaagaaagcaaaatagaacgaaatct |
1824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 1759 - 1715
Alignment:
| Q |
134 |
tgtgatatatgctatttattatggagggactagccaatcaaacgt |
178 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1759 |
tgtgagatatgctatttattatggagggactagccaatcaaacgt |
1715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 43555669 - 43555613
Alignment:
| Q |
233 |
aaatggcagaagcacgttgtaatgaatcccttaaaatcacaaacgaaaatgagttca |
289 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
43555669 |
aaatggcagaagcacgttctaatgtatcgcttgaaatcacaaacgaaaatgagttca |
43555613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 43555880 - 43555794
Alignment:
| Q |
140 |
atatgctatttattatggagggactagccaatcaaacgttgaattcatacgtggcatttagcaaataaagtatttggcagaaatcac |
226 |
Q |
| |
|
|||| |||||||||||||| | || ||||||||||| || |||||||||||||||||| ||||||| |||||| ||| ||||||| |
|
|
| T |
43555880 |
atattctatttattatggaagaacaggccaatcaaacatttaattcatacgtggcatttgccaaataatgtatttagcataaatcac |
43555794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 43556029 - 43555979
Alignment:
| Q |
13 |
attaaattgtctaaaataattaatttaagaaagcaaaatagaacgaaatct |
63 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
43556029 |
attaaattgtctaaaaaatttaatttaagaaagcaaaatagaaccaaatct |
43555979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University