View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_24 (Length: 277)
Name: NF2663_low_24
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 38183970 - 38184231
Alignment:
| Q |
1 |
aagaaacaatatatcccacataaaatgtgacacattctacctacttcatagttcatagaatttgcattattatta---atatcatcaaca--------cg |
89 |
Q |
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| T |
38183970 |
aagaaacaatatatcccacataaaatgtgacacattctagctacttcatag-------aatttgcattattattattaatatcatcaacagttcaacacg |
38184062 |
T |
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| Q |
90 |
cacttactatatgtaacaccataataaatggtacaaatacaataatcatcataacccttcaagaattattttcaaaaatagaaagtaaaaatgattgaaa |
189 |
Q |
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| T |
38184063 |
tacttactatatgtaacaccataataaatggtacaaatacaataatcatcataacccttcaagaattattttcaaaaatagaaagtaaaaatgattgaaa |
38184162 |
T |
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| Q |
190 |
acagtcaaaacactgaacttttttcccctcttgaacattataaattaagtcttcttaggagcaaccttt |
258 |
Q |
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| T |
38184163 |
acagtcaaaacactgaacttttttcccctcttgaacattataaattaagtcttcttaggagcaaccttt |
38184231 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 49011331 - 49011404
Alignment:
| Q |
9 |
atatatcccacataaaatgtgacacattctacctacttcatagttcatagaatttgcattattattaatatcatcaacacg |
89 |
Q |
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| T |
49011331 |
atatatcccacataaaatttgacatattctagctacttca-------tagaatttgcattattattaatatcatcaacacg |
49011404 |
T |
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