View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_27 (Length: 266)
Name: NF2663_low_27
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_27 |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 7614 - 7381
Alignment:
| Q |
17 |
ctgtgtttagattttttcactgatgaagtgctaatacaacaactgtacttcataaccctacaatttttacaacaagtagtgaagggattcttcatttttt |
116 |
Q |
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| T |
7614 |
ctgtgtttagattttttcactgatgaagtgctaatacaacaactgtacttcataaacctacaatttttacaacaagtagtgaagggattcttcatttttt |
7515 |
T |
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| Q |
117 |
gtacttttcttcgcaccaatcaatgggtcaataatgctcctccaatcgctgtagttaagagcatttcctgcatcgggcaacacgaatccattgacataga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7514 |
gtacttttcttcgcaccaatcaatgggtcaataatgctcctccaatcgctgtagttaagagcatttcctgcatcgggcaacacgaatccattgacataga |
7415 |
T |
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| Q |
217 |
aaaaaggcgtcccagacactcctcttgaagcagc |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7414 |
aaaaaggcgtcccagacactcctcttgaagcagc |
7381 |
T |
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