View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_30 (Length: 252)
Name: NF2663_low_30
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 11064459 - 11064673
Alignment:
| Q |
39 |
gtctagttaaaaac-ctttaatttgatttataaattgttagtctatctcctagtttggtgactaacttggtagatatagacaaatttagatacatgtatc |
137 |
Q |
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| T |
11064459 |
gtctagttaaaaaatctttaatttgatttataaattgttagtctatctcctagtttggtgactaacttggtagatatagacaaatttagatacatttatc |
11064558 |
T |
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| Q |
138 |
caaatttatccccttgaataaatttgttaaattgttaatgttaatgaaaaatattattttaaaataagtcattgaagaagataagaatgatttattacaa |
237 |
Q |
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| T |
11064559 |
caaatttatccccttaaataaatttgttatattgttaatgttaatgaaaaatattatttcaaaataagtcattgaagaagataagaatgatttattacaa |
11064658 |
T |
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| Q |
238 |
tttgaaagttacaaa |
252 |
Q |
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| T |
11064659 |
tttgaaagttacaaa |
11064673 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 2123988 - 2123947
Alignment:
| Q |
205 |
gtcattgaagaagataagaatgatttattacaatttgaaagt |
246 |
Q |
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| T |
2123988 |
gtcattgaaaaagacaagcatgatttattacaatttgaaagt |
2123947 |
T |
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