View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_33 (Length: 237)
Name: NF2663_low_33
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_33 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 2233256 - 2233035
Alignment:
| Q |
16 |
agttagaaggttaactgccaaatatacttaccaaccagcccaagccaaaaacagcttggcacctaattctggtctttttgtgcaaaaactgtatagaatg |
115 |
Q |
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| T |
2233256 |
agttagaaggttaactgccaaatatacttaccaaccagcccaagccaaaaacagcttggcacctaattctggtctttttgtgcaaaaactgtatagaatg |
2233157 |
T |
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| Q |
116 |
gtgtacatgataacagttggttcagcaactcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatatagctgtggatgtcaatg |
215 |
Q |
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| T |
2233156 |
gtgtacatgataacagttggttcagcaattcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatatagctgtggatgtcaatg |
2233057 |
T |
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| Q |
216 |
tttcaactgtgctcaagattcc |
237 |
Q |
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| T |
2233056 |
tttcaactgtgctcaagattcc |
2233035 |
T |
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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 49708439 - 49708635
Alignment:
| Q |
41 |
acttaccaaccagcccaagccaaaaacagcttggcacctaattctggtctttttgtgcaaaaactgtatagaatggtgtacatgataacagttggttcag |
140 |
Q |
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| T |
49708439 |
acttaccaaccagcccaagctagaaagagcttggtacccaattgaggtgtatttttgcagaaagtgtaaagataagtgtacattataacagttggttctg |
49708538 |
T |
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| Q |
141 |
caactcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatatagctgtggatgtcaatgtttcaactgtgctcaagattcc |
237 |
Q |
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| T |
49708539 |
caactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgtttctacagtgctcaagcttcc |
49708635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 45078029 - 45077947
Alignment:
| Q |
116 |
gtgtacatgataacagttggttcagcaactcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatat |
198 |
Q |
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| T |
45078029 |
gtgtacatgatcacagtaggttctgccactcctaaaatcagtaaaggttgaccaccaatgattgagtgtataatgccacatat |
45077947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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