View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_34 (Length: 233)
Name: NF2663_low_34
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_34 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4795667 - 4795899
Alignment:
| Q |
1 |
catccattattctgtgatgctgctgagatatgttgatgaggttgaaaaaataaagttaccattaatgctgttacaaccaaagaaattaatgatcctttca |
100 |
Q |
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| T |
4795667 |
catccattattctgtgatgctgctgagctatgttgatgaggttgaaaaaataaagttaccattaatgctgttacaaccaaagaaattaatgatcctttca |
4795766 |
T |
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| Q |
101 |
ttgtactgttggagctaatatcgaactcttgctagtttataagattgtgcagatatttaattgaatatattgtgaagattattatagataaagataagca |
200 |
Q |
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| T |
4795767 |
ttgtactgttggagcaaatatcgaactcttgctagtttataagattgtgcagatgtttaattgaatatagtgtgaagattattatagataaagataagaa |
4795866 |
T |
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| Q |
201 |
gatatcaagatatggggatgaggaacgtttgtt |
233 |
Q |
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| T |
4795867 |
gatatcaagatatggggatgaggaacgtttgtt |
4795899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 4679793 - 4679830
Alignment:
| Q |
10 |
ttctgtgatgctgctgagatatgttgatgaggttgaaa |
47 |
Q |
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| T |
4679793 |
ttctgtggtgctgctgagatatgttgatgtggttgaaa |
4679830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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