View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_4 (Length: 659)
Name: NF2663_low_4
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 31066607 - 31066825
Alignment:
| Q |
12 |
gaagatgatgaagagataaaatgtagcgacccatttttctgtctatggaaagtggttagcttagcttaggggatctatgctaattcatttccttatgtaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066607 |
gaagatgatgaagagataaaatgtagcgacccatttttctgtctatggaaagtggttagcttagcttaggggatctatgctaattcatttccttatgtaa |
31066706 |
T |
|
| Q |
112 |
taaaaggcacaaatatttatagagtttttctatcctatcatttgtaaatttacttatggtaaaaagttcaaaattgtaagtttgtatgagaaattgtgta |
211 |
Q |
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| T |
31066707 |
tgaaaggcacaaatatttatagagtttttctatccgatcatttgtaaatttacttatggtaaaaagttcaaaattgtaagtttgtatgagaaattgtgta |
31066806 |
T |
|
| Q |
212 |
ttttatatcaaatatataa |
230 |
Q |
| |
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||||||||||||||||||| |
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| T |
31066807 |
ttttatatcaaatatataa |
31066825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 425 - 641
Target Start/End: Original strand, 31067021 - 31067237
Alignment:
| Q |
425 |
gaagacagatcatatcctaagttatctaaaaattgtaaccaatttagattggtcatcttggctcctttagatgnnnnnnntttggttagtaaagactatt |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
31067021 |
gaagacagatcatatcctaagttatctaaaaattgtaaccaatttagattggtcatcttggctcctttagatgaaaaaaatttggttagtaaagacaatt |
31067120 |
T |
|
| Q |
525 |
caccttgttgactttaagttttccaatgactaaccaccatttaacagcaaaggaggtttagtacctggcagatcaaaaaatgaagggaacagaaaacaga |
624 |
Q |
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| T |
31067121 |
caccttgttgactttaagttttccaatgactaaccaccatttaacagcaaaggaggtttagtacctggcagatcaaaaaatgaagggaacagaaaacaga |
31067220 |
T |
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| Q |
625 |
gtaaaaagaggagtgat |
641 |
Q |
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||||||||||||||||| |
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| T |
31067221 |
gtaaaaagaggagtgat |
31067237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 31066885 - 31066992
Alignment:
| Q |
290 |
catgtgcaatgttacatatgttactcaaactcgtgcttatatatgagaatgggagaaaagacagctcaaga-tattcttattcttagctttttggtaagc |
388 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31066885 |
catgtgcaatgttacatgtgttactcaaacttgtgcttatatatgagaatgggagaaaagacagctcaagagtattcttattcttagctttttggtaagc |
31066984 |
T |
|
| Q |
389 |
taaataag |
396 |
Q |
| |
|
|||||||| |
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|
| T |
31066985 |
taaataag |
31066992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 31150307 - 31150427
Alignment:
| Q |
12 |
gaagatgatgaagagataaaatgtagcgacccatttttctgtctatggaaagtggttagcttagcttaggggatctatgctaattcatttccttatgtaa |
111 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
31150307 |
gaagatgatgaagagataaaatggagcgacccatttttcagtctatggaaagtgttgagcttagcttaggggatatatgctaattcatctccttatgtaa |
31150406 |
T |
|
| Q |
112 |
taaaaggcacaaatatttata |
132 |
Q |
| |
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| ||||| ||||||||||||| |
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| T |
31150407 |
tgaaaggaacaaatatttata |
31150427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 31168599 - 31168719
Alignment:
| Q |
12 |
gaagatgatgaagagataaaatgtagcgacccatttttctgtctatggaaagtggttagcttagcttaggggatctatgctaattcatttccttatgtaa |
111 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| || |
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| T |
31168599 |
gaagatgatgaagagataaaatggagcgacccatttttcagtctatggaaagtgttgagcttagcttaggggatatatgctaattcatctccttatgcaa |
31168698 |
T |
|
| Q |
112 |
taaaaggcacaaatatttata |
132 |
Q |
| |
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| ||||| ||||||||||||| |
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| T |
31168699 |
tgaaaggaacaaatatttata |
31168719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 31113958 - 31114027
Alignment:
| Q |
27 |
ataaaatgtagcgacccatttttctgtctatggaaagtggttagcttagcttaggggatctatgctaatt |
96 |
Q |
| |
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|||||||| ||| |||||||||||||| ||||||||||| |||||||| | ||||||||||||||||| |
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| T |
31113958 |
ataaaatggagccacccatttttctgtttatggaaagtgcttagcttaatcttggggatctatgctaatt |
31114027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 34741671 - 34741755
Alignment:
| Q |
146 |
ctatcatttgtaaatttacttatggtaaaaagttcaaaattgtaagtttgtatgagaaattgtgtattttatatcaaatatataa |
230 |
Q |
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||||||| ||||||||| | ||| ||||||||| ||||| ||||||||||| |||| ||||| ||||||||| |||||||||| |
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| T |
34741671 |
ctatcatatgtaaatttgttcatgttaaaaagtttaaaataataagtttgtattagaacttgtgcattttatattaaatatataa |
34741755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 2097014 - 2096959
Alignment:
| Q |
175 |
aagttcaaaattgtaagtttgtatgagaaattgtgtattttatatcaaatatataa |
230 |
Q |
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||||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||| |
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| T |
2097014 |
aagttcaaaatggtaagtttgtattggaacttgtgcattttatattaaatatataa |
2096959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 2544242 - 2544289
Alignment:
| Q |
172 |
aaaaagttcaaaattgtaagtttgtatgagaaattgtgtattttatat |
219 |
Q |
| |
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|||||||||||||| |||||||||||| | || ||||||||||||||| |
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| T |
2544242 |
aaaaagttcaaaatagtaagtttgtattaaaacttgtgtattttatat |
2544289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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