View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_5 (Length: 585)
Name: NF2663_low_5
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 109 - 432
Target Start/End: Original strand, 29262022 - 29262360
Alignment:
| Q |
109 |
tacctatcatttggtgtaatttttgtacatctttcttggcacctcattgaataacctcttcatccttttatatactataaggtggatatggaatcaataa |
208 |
Q |
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| T |
29262022 |
tacctatcatttggtgtaatttttgtacatctttcttggcacctcattgaataacctcttcatccttttatata-----aggtggatatggaatcaataa |
29262116 |
T |
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| Q |
209 |
agtcctttattattatttgtactctagaaagaaatacaacttggttgactttaacatattgtgag-----------------gacttaacatgttgctga |
291 |
Q |
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| T |
29262117 |
agtcctttattattatttgtactctagaaagaaatacaacttggctgactttaacatattgtgaggacttaacatatggaatgacttaacatgttactga |
29262216 |
T |
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| Q |
292 |
tctccctatatgctgtgtttgtactttgtagctttgcggtagtaagtagtaggtggaaagtggtccccaacaaaaaacttattgttgctgatatttttgt |
391 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29262217 |
tctccctatatgctgtgtttgtacttagtagctttgcggtagtaagtagtaggttgaaagtggtccccaacaaaaaacttattgttgctgatatttttgt |
29262316 |
T |
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| Q |
392 |
tatc---taatatctataattttgtatgagttattggtttaata |
432 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29262317 |
tatctaataatatctataattttgtatgagttattggtttaata |
29262360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 369 - 491
Target Start/End: Complemental strand, 29258548 - 29258423
Alignment:
| Q |
369 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaacct---tccttgtgtaatttcattatgc |
465 |
Q |
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| T |
29258548 |
cttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttatttattgtcaaccttcctccttgtataatttcaatatgc |
29258449 |
T |
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| Q |
466 |
tttgtaaacatcttggtagtagcttt |
491 |
Q |
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| T |
29258448 |
tttgtagacatcttggtagtagcttt |
29258423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 369 - 485
Target Start/End: Original strand, 29286540 - 29286658
Alignment:
| Q |
369 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaac---cttccttgtgtaatttcattatgc |
465 |
Q |
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| T |
29286540 |
cttattgttgcggatatttttgttat-tgatatctataattttgcatgagttattggtttacttattgccaaccttcttccttgtgtaatttcaatatgc |
29286638 |
T |
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| Q |
466 |
tttgtaaacatcttggtagt |
485 |
Q |
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| T |
29286639 |
tatgtagacatcttggtagt |
29286658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 369 - 445
Target Start/End: Original strand, 35234991 - 35235067
Alignment:
| Q |
369 |
cttattgttgctgatatttttgttatctaatatctataattttgtatgagttattggtttaataattgtcaaccttc |
445 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||| |
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| T |
35234991 |
cttattgttgctgatatttttgttatctgatatctataattttgtatgagttattggtttacttattgccaaccttc |
35235067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 29261933 - 29261968
Alignment:
| Q |
20 |
tggtttgtatgtggctgttgttagtgtaataataca |
55 |
Q |
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| T |
29261933 |
tggtttgtatgtggctgttgttagtgtaataataca |
29261968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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