View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2663_low_6 (Length: 492)

Name: NF2663_low_6
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2663_low_6
NF2663_low_6
[»] chr5 (20 HSPs)
chr5 (2-262)||(22731952-22732216)
chr5 (1-96)||(26362462-26362558)
chr5 (19-96)||(12298441-12298521)
chr5 (454-492)||(2477638-2477676)
chr5 (454-492)||(3362780-3362818)
chr5 (454-492)||(6043536-6043574)
chr5 (454-492)||(11361156-11361194)
chr5 (454-492)||(12850803-12850841)
chr5 (454-492)||(38899751-38899789)
chr5 (20-55)||(4828917-4828952)
chr5 (454-489)||(13664644-13664679)
chr5 (365-404)||(22731754-22731793)
chr5 (454-492)||(37321818-37321857)
chr5 (454-492)||(4892204-4892242)
chr5 (454-492)||(14138670-14138708)
chr5 (454-492)||(25398240-25398278)
chr5 (456-490)||(27481830-27481864)
chr5 (454-492)||(33584354-33584392)
chr5 (456-492)||(8145379-8145415)
chr5 (454-490)||(22913081-22913117)
[»] chr4 (21 HSPs)
chr4 (3-106)||(43134445-43134547)
chr4 (454-492)||(2624839-2624877)
chr4 (454-492)||(4751448-4751486)
chr4 (454-492)||(7745137-7745175)
chr4 (454-492)||(10442814-10442852)
chr4 (454-492)||(22199263-22199301)
chr4 (454-492)||(31078844-31078882)
chr4 (454-492)||(36072949-36072987)
chr4 (454-492)||(49387913-49387951)
chr4 (454-492)||(50156603-50156641)
chr4 (5-83)||(46737271-46737351)
chr4 (7-56)||(52708534-52708583)
chr4 (5-57)||(779760-779812)
chr4 (454-490)||(33530715-33530751)
chr4 (454-492)||(21802347-21802385)
chr4 (454-492)||(24128241-24128279)
chr4 (454-492)||(47290068-47290106)
chr4 (454-490)||(24392669-24392705)
chr4 (456-492)||(36073354-36073390)
chr4 (20-56)||(38179874-38179910)
chr4 (454-490)||(44893241-44893277)
[»] chr8 (17 HSPs)
chr8 (454-492)||(26042141-26042179)
chr8 (5-56)||(11517607-11517658)
chr8 (454-492)||(1645990-1646028)
chr8 (454-492)||(15187562-15187600)
chr8 (454-492)||(24211578-24211616)
chr8 (454-492)||(32064747-32064785)
chr8 (454-492)||(32393860-32393898)
chr8 (454-492)||(34665384-34665422)
chr8 (454-492)||(14128866-14128904)
chr8 (454-492)||(17841875-17841913)
chr8 (454-492)||(20091826-20091864)
chr8 (454-492)||(35353043-35353081)
chr8 (454-492)||(40780154-40780192)
chr8 (454-492)||(42755067-42755105)
chr8 (455-492)||(8453837-8453874)
chr8 (456-492)||(37986080-37986116)
chr8 (460-492)||(38016979-38017011)
[»] chr7 (15 HSPs)
chr7 (1-83)||(24613208-24613289)
chr7 (454-492)||(3961981-3962019)
chr7 (454-492)||(4974760-4974798)
chr7 (454-492)||(15329275-15329313)
chr7 (454-492)||(15577875-15577913)
chr7 (454-492)||(24394974-24395012)
chr7 (454-492)||(35444560-35444598)
chr7 (454-492)||(42611813-42611851)
chr7 (454-492)||(45637714-45637752)
chr7 (454-492)||(48880952-48880990)
chr7 (5-56)||(28749941-28749992)
chr7 (454-492)||(20010122-20010160)
chr7 (454-492)||(34482837-34482875)
chr7 (8-56)||(10980680-10980728)
chr7 (454-490)||(37477107-37477143)
[»] chr3 (23 HSPs)
chr3 (8-75)||(31311490-31311559)
chr3 (19-97)||(34809182-34809262)
chr3 (454-490)||(24343549-24343585)
chr3 (454-492)||(2754719-2754757)
chr3 (454-492)||(3456066-3456104)
chr3 (454-492)||(3574552-3574590)
chr3 (454-492)||(6041886-6041924)
chr3 (454-492)||(11347270-11347308)
chr3 (454-492)||(19650925-19650963)
chr3 (454-492)||(22426369-22426407)
chr3 (454-492)||(37217078-37217116)
chr3 (454-492)||(42297355-42297393)
chr3 (454-492)||(48160907-48160945)
chr3 (454-492)||(3137439-3137477)
chr3 (454-492)||(8320609-8320647)
chr3 (454-492)||(30385013-30385051)
chr3 (454-492)||(33113795-33113833)
chr3 (454-492)||(34482935-34482973)
chr3 (454-492)||(36865052-36865090)
chr3 (455-489)||(40327878-40327912)
chr3 (454-490)||(33839533-33839569)
chr3 (458-490)||(41224239-41224271)
chr3 (30-83)||(48861244-48861299)
[»] chr2 (14 HSPs)
chr2 (7-62)||(31364915-31364970)
chr2 (454-492)||(10661889-10661927)
chr2 (454-492)||(21936083-21936121)
chr2 (454-492)||(35160759-35160797)
chr2 (20-67)||(5963988-5964035)
chr2 (454-489)||(9293604-9293639)
chr2 (454-489)||(9723407-9723442)
chr2 (454-492)||(7475533-7475571)
chr2 (454-492)||(13354848-13354886)
chr2 (3-96)||(14250564-14250659)
chr2 (454-492)||(23268087-23268125)
chr2 (454-492)||(33380209-33380247)
chr2 (1-59)||(43470474-43470532)
chr2 (167-208)||(16711861-16711902)
[»] scaffold0178 (1 HSPs)
scaffold0178 (454-492)||(11623-11661)
[»] chr6 (14 HSPs)
chr6 (454-492)||(6127277-6127315)
chr6 (454-492)||(17705490-17705528)
chr6 (454-492)||(23291109-23291147)
chr6 (454-492)||(28675150-28675188)
chr6 (454-492)||(33695352-33695390)
chr6 (454-492)||(33696698-33696736)
chr6 (3-125)||(10424696-10424820)
chr6 (1-73)||(27133938-27134012)
chr6 (454-492)||(17176046-17176084)
chr6 (454-492)||(18365598-18365636)
chr6 (454-492)||(18370862-18370900)
chr6 (454-492)||(25986932-25986970)
chr6 (5-83)||(9062864-9062944)
chr6 (455-487)||(8515755-8515787)
[»] chr1 (19 HSPs)
chr1 (454-492)||(18404444-18404482)
chr1 (454-492)||(40214990-40215028)
chr1 (456-492)||(16045823-16045859)
chr1 (19-83)||(27858709-27858772)
chr1 (19-75)||(33776709-33776765)
chr1 (8-56)||(44107720-44107768)
chr1 (454-492)||(6883489-6883527)
chr1 (454-492)||(9910318-9910356)
chr1 (454-492)||(19015406-19015444)
chr1 (19-57)||(25113842-25113880)
chr1 (454-492)||(25463678-25463716)
chr1 (5-59)||(35838359-35838412)
chr1 (454-492)||(36966733-36966771)
chr1 (454-492)||(37821859-37821897)
chr1 (454-492)||(44094700-44094738)
chr1 (455-492)||(3559620-3559657)
chr1 (22-59)||(24084186-24084223)
chr1 (5-74)||(5302381-5302452)
chr1 (454-490)||(32000294-32000330)
[»] scaffold0024 (1 HSPs)
scaffold0024 (5-65)||(36266-36326)
[»] scaffold0665 (1 HSPs)
scaffold0665 (454-492)||(3070-3108)
[»] scaffold0471 (1 HSPs)
scaffold0471 (454-492)||(12844-12882)
[»] scaffold0204 (1 HSPs)
scaffold0204 (454-492)||(4398-4436)
[»] scaffold0096 (1 HSPs)
scaffold0096 (454-492)||(41013-41051)
[»] scaffold0085 (1 HSPs)
scaffold0085 (454-492)||(47852-47890)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 22732216 - 22731952
Alignment:
Q  2 ttttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaaattcctattattacttccttaaccg 99  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  22732216 ttttgcattgaaaagtggtgaaaagtagaatattcaactttatgaaattcaaaaaattattgtttttaatgaaaaattcctatttttacttccttaaccg 22732117  T
Q  100 gtgcctcagggcactagttaacatgattattannnnnnnaaatattaaccagtgtcc--cgggg-acaagttaaagaattataaaaagatatattttctc 196  Q
    ||||  | ||| |||||||||| ||||| ||        |||  ||||||||| |||  ||||| || ||||||||||| |||||| || |||||||||     
T  22732116 gtgctccggggaactagttaacgtgatttttttttttggaaaggttaaccagt-tccttcggggcactagttaaagaatcataaaaggaaatattttctt 22732018  T
Q  197 agaaattgtgtaaagaattatgtcgattttacttgtggtaacttaaaaaagtgttacttttaatgc 262  Q
      ||||||||||||||||||||||||||| |||| | ||||| | ||||| |||| ||||||||||    
T  22732017 gaaaattgtgtaaagaattatgtcgatttcactttttgtaacctgaaaaaatgttgcttttaatgc 22731952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26362462 - 26362558
Alignment:
Q  1 attttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattatt-ttttaatgaaaaattcctattattacttccttaa 96  Q
    ||||| |||||| |||| |||||||||| |||||| |||||||||||||||||||| || || |||| |||||||||| ||||| ||||||||||||    
T  26362462 attttacattgggaagtggtgaaaagtaaaatattcaactttatgaaagtcaaaaagttgttgtttttatgaaaaattactatttttacttccttaa 26362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 12298441 - 12298521
Alignment:
Q  19 gtgaaaagtagaatatttaactttatgaaagtcaaaaa---attattttttaatgaaaaattcctattattacttccttaa 96  Q
    ||||| |||||||| || ||||||||||||||||||||   |||||||||| ||||||||||  |||| ||||||||||||    
T  12298441 gtgaagagtagaatgttcaactttatgaaagtcaaaaagttattatttttttatgaaaaatttatatttttacttccttaa 12298521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 2477638 - 2477676
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2477638 gcaatgctatatatcaagaaagattttatcaagaaaatt 2477676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 3362780 - 3362818
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3362780 gcaatgctatatatcaagaaagattttatcaagaaaatt 3362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 6043574 - 6043536
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6043574 gcaatgctatatatcaagaaagattttatcaagaaaatt 6043536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 11361194 - 11361156
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11361194 gcaatgctatatatcaagaaagattttatcaagaaaatt 11361156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 12850803 - 12850841
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  12850803 gcaatgctatatatcaagaaagattttatcaagaaaatt 12850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 38899789 - 38899751
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38899789 gcaatgctatatatcaagaaagattttatcaagaaaatt 38899751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 4828952 - 4828917
Alignment:
Q  20 tgaaaagtagaatatttaactttatgaaagtcaaaa 55  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4828952 tgaaaagtagaatatttaactttatgaaagttaaaa 4828917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Original strand, 13664644 - 13664679
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaa 489  Q
    |||||| |||||||||||||||||||||||||||||    
T  13664644 gcaatgttatatattaagaaagattttatcaagaaa 13664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 22731793 - 22731754
Alignment:
Q  365 ccttgcacataatattctgataccaactgacttacactta 404  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  22731793 ccttacacataatattccgataccaactgacttacactta 22731754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 37321857 - 37321818
Alignment:
Q  454 gcaatgctatatat-taagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  37321857 gcaatgctatatatctaagaaagattttatcaagaaaatt 37321818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 4892204 - 4892242
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  4892204 gcaatgctatatatcaagaaagattttttcaagaaaatt 4892242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 14138670 - 14138708
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  14138670 gcaatgttatatatcaagaaagattttatcaagaaaatt 14138708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 25398240 - 25398278
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  25398240 gcaatgctatatatcaagaaagattttttcaagaaaatt 25398278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 456 - 490
Target Start/End: Original strand, 27481830 - 27481864
Alignment:
Q  456 aatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||| ||||||||||||||||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaa 27481864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 33584392 - 33584354
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  33584392 gcaatgctatatatcaagaaagattttttcaagaaaatt 33584354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 8145379 - 8145415
Alignment:
Q  456 aatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatt 8145415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 22913117 - 22913081
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||| |||||||||||| |||||||||    
T  22913117 gcaatgctatatatcaagaaagattttttcaagaaaa 22913081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 43134547 - 43134445
Alignment:
Q  3 tttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattattttttaatgaaaaattcctattattacttccttaaccggtg 102  Q
    |||||||| | |||| |||| ||||||||| || |||||| ||||||| ||||| || ||||||| ||||||||| ||||| |||||||||||||  |||    
T  43134547 tttgcattaggaagtggtgataagtagaatgttcaactttttgaaagttaaaaagttgtttttta-tgaaaaatttctatttttacttccttaactagtg 43134449  T
Q  103 cctc 106  Q
    ||||    
T  43134448 cctc 43134445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 2624839 - 2624877
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2624839 gcaatgctatatatcaagaaagattttatcaagaaaatt 2624877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 4751448 - 4751486
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4751448 gcaatgctatatatcaagaaagattttatcaagaaaatt 4751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 7745175 - 7745137
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7745175 gcaatgctatatatcaagaaagattttatcaagaaaatt 7745137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 10442852 - 10442814
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10442852 gcaatgctatatatcaagaaagattttatcaagaaaatt 10442814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 22199263 - 22199301
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22199263 gcaatgctatatatcaagaaagattttatcaagaaaatt 22199301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 31078882 - 31078844
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31078882 gcaatgctatatatcaagaaagattttatcaagaaaatt 31078844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 36072949 - 36072987
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  36072949 gcaatgctatatatcaagaaagattttatcaagaaaatt 36072987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 49387951 - 49387913
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  49387951 gcaatgctatatatcaagaaagattttatcaagaaaatt 49387913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 50156641 - 50156603
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  50156641 gcaatgctatatattaagaaagattttttcaagaaaatt 50156603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 46737271 - 46737351
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaaattcctatt 83  Q
    ||||||||||| |  |||||||| |||| ||||||||||||||| ||||||| ||||  ||||||||||||| || |||||    
T  46737271 tgcattggaaattgatgaaaagtggaatgtttaactttatgaaaatcaaaaagttattgtttttaatgaaaattttctatt 46737351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 52708583 - 52708534
Alignment:
Q  7 cattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    ||||| ||| ||||||||||| |||| |||||||||||||||||||||||    
T  52708583 cattgaaaattagtgaaaagttgaatgtttaactttatgaaagtcaaaaa 52708534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 779760 - 779812
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaa 57  Q
    |||||| |||| | ||||||||| |||| ||||||||||||||||||||||||    
T  779760 tgcatttgaaattggtgaaaagttgaatgtttaactttatgaaagtcaaaaaa 779812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 33530751 - 33530715
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33530751 gcaatgctatatatcaagaaagattttatcaagaaaa 33530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 21802385 - 21802347
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  21802385 gcaatgctatatatcaagaaatattttatcaagaaaatt 21802347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 24128241 - 24128279
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  24128241 gcaatgctatatatcaagaaagattttttcaagaaaatt 24128279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 47290068 - 47290106
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  47290068 gcaatgctatatatcaagaaagattttttcaagaaaatt 47290106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 24392669 - 24392705
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||| |||||||||||| |||||||||    
T  24392669 gcaatgctatatatcaagaaagattttctcaagaaaa 24392705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 36073354 - 36073390
Alignment:
Q  456 aatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||| |||||||||||| |||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatt 36073390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 38179874 - 38179910
Alignment:
Q  20 tgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    |||||||| |||| |||||||||||||||||||||||    
T  38179874 tgaaaagttgaatgtttaactttatgaaagtcaaaaa 38179910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 44893277 - 44893241
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  44893277 gcaatgctatatattaagaaagattttttcaaaaaaa 44893241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 26042179 - 26042141
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26042179 gcaatgctatatattaagaaagattttatcaagaaaatt 26042141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 11517658 - 11517607
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    ||||||||||| | || ||||||||||| |||||||||||||||||||||||    
T  11517658 tgcattggaaattggtaaaaagtagaatgtttaactttatgaaagtcaaaaa 11517607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 1646028 - 1645990
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1646028 gcaatgctatatatcaagaaagattttatcaagaaaatt 1645990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 15187562 - 15187600
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15187562 gcaatgctatatatcaagaaagattttatcaagaaaatt 15187600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 24211616 - 24211578
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24211616 gcaatgctatatatcaagaaagattttatcaagaaaatt 24211578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 32064747 - 32064785
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32064747 gcaatgctatatatcaagaaagattttatcaagaaaatt 32064785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 32393860 - 32393898
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  32393860 gcaatgctatatatcaagaaagattttatcaagaaaatt 32393898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 34665384 - 34665422
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34665384 gcaatgctatatatcaagaaagattttatcaagaaaatt 34665422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 14128866 - 14128904
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  14128866 gcaatgctatatatcaagaaagattttatcaataaaatt 14128904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 17841913 - 17841875
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  17841913 gcaatgctatatatcaagaaagattttttcaagaaaatt 17841875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 20091864 - 20091826
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  20091864 gcaatgctatatatcaagaaatattttatcaagaaaatt 20091826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 35353043 - 35353081
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  35353043 gcaatgctatatatcaagaaagattttttcaagaaaatt 35353081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 40780192 - 40780154
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  40780192 gcaatgctatatatcaagaaagattttttcaagaaaatt 40780154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 42755105 - 42755067
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  42755105 gcaatgatatatatcaagaaagattttatcaagaaaatt 42755067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 8453837 - 8453874
Alignment:
Q  455 caatgctatatattaagaaagattttatcaagaaaatt 492  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatt 8453874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 37986116 - 37986080
Alignment:
Q  456 aatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaatt 37986080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 38016979 - 38017011
Alignment:
Q  460 ctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||| ||||||||||||||||||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatt 38017011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24613208 - 24613289
Alignment:
Q  1 attttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattattttttaatgaaaaattcctatt 83  Q
    |||||||||||  || |||||||||||||||| || |||||||||||||||||||| ||  ||||||||||||| || |||||    
T  24613208 attttgcattgagaattagtgaaaagtagaatgttcaactttatgaaagtcaaaaagtt-gtttttaatgaaaattttctatt 24613289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 3961981 - 3962019
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3961981 gcaatgctatatatcaagaaagattttatcaagaaaatt 3962019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 4974798 - 4974760
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  4974798 gcaatgctatatatcaagaaagattttatcaagaaaatt 4974760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 15329275 - 15329313
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15329275 gcaatgctatatatcaagaaagattttatcaagaaaatt 15329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 15577913 - 15577875
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15577913 gcaatgctatatatcaagaaagattttatcaagaaaatt 15577875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 24394974 - 24395012
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24394974 gcaatgctatatatcaagaaagattttatcaagaaaatt 24395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 35444560 - 35444598
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  35444560 gcaatgctatatattaagaaagattttttcaagaaaatt 35444598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 42611813 - 42611851
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42611813 gcaatgctatatatcaagaaagattttatcaagaaaatt 42611851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 45637714 - 45637752
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45637714 gcaatgctatatatcaagaaagattttatcaagaaaatt 45637752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 48880990 - 48880952
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48880990 gcaatgctatatatcaagaaagattttatcaagaaaatt 48880952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 28749941 - 28749992
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    ||||||||||| |  ||||||||||||| ||||||||||||||||| |||||    
T  28749941 tgcattggaaattgatgaaaagtagaatgtttaactttatgaaagtaaaaaa 28749992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 20010160 - 20010122
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  20010160 gcaatgctatatatcaagaaagattttatcaaaaaaatt 20010122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 34482837 - 34482875
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  34482837 gcaatgctatatatcaagaaagattttattaagaaaatt 34482875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10980680 - 10980728
Alignment:
Q  8 attggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    |||| ||| |||||||||||||||| ||||||||||| ||||| |||||    
T  10980680 attgaaaattagtgaaaagtagaatgtttaactttataaaagttaaaaa 10980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 37477143 - 37477107
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||| |||||||||||| |||||||||    
T  37477143 gcaatgctatatatcaagaaagattttctcaagaaaa 37477107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 31311490 - 31311559
Alignment:
Q  8 attggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaatt-at-tttttaatgaaaaa 75  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||    
T  31311490 attggaaagtagagaaaagtagaatgtttaattttatgaaagtcaaaaagttgatgtttttaatgaaaaa 31311559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 34809182 - 34809262
Alignment:
Q  19 gtgaaaagtagaatatttaactttatgaaagtcaaaaaattatt--ttttaatgaaaaattcctattattacttccttaac 97  Q
    |||||||||||||| |||||||||||||||||||||||||| ||  ||||||| |||||   ||||| || ||||||||||    
T  34809182 gtgaaaagtagaatgtttaactttatgaaagtcaaaaaattgttgcttttaataaaaaaaatctatttttgcttccttaac 34809262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 24343549 - 24343585
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||||||||||||||||||||||||||    
T  24343549 gcaatgctatatattaagaaagattttatcaagaaaa 24343585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 2754719 - 2754757
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  2754719 gcaatgctatatatcaagaaagattttatcaagaaaatt 2754757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 3456066 - 3456104
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3456066 gcaatgctatatatcaagaaagattttatcaagaaaatt 3456104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 3574590 - 3574552
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3574590 gcaatgctatatatcaagaaagattttatcaagaaaatt 3574552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 6041886 - 6041924
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6041886 gcaatgctatatatcaagaaagattttatcaagaaaatt 6041924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 11347270 - 11347308
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11347270 gcaatgctatatatcaagaaagattttatcaagaaaatt 11347308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 19650963 - 19650925
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  19650963 gcaatgttatatattaagaaagattttatcaagaaaatt 19650925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 22426407 - 22426369
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  22426407 gcaatgttatatattaagaaagattttatcaagaaaatt 22426369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 37217116 - 37217078
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37217116 gcaatgctatatatcaagaaagattttatcaagaaaatt 37217078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 42297355 - 42297393
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  42297355 gcaatgctatatatcaagaaagattttatcaagaaaatt 42297393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 48160907 - 48160945
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48160907 gcaatgctatatatcaagaaagattttatcaagaaaatt 48160945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 3137477 - 3137439
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  3137477 gcaatgctatatatcaagaaagattttttcaagaaaatt 3137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 8320647 - 8320609
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  8320647 gcaatgttatatatcaagaaagattttatcaagaaaatt 8320609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 30385013 - 30385051
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  30385013 gcaatgctatttatcaagaaagattttatcaagaaaatt 30385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 33113795 - 33113833
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  33113795 gcaatgctatatatcaagaaagattttattaagaaaatt 33113833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 34482973 - 34482935
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  34482973 gcaatgctatatatcaagaaagattttttcaagaaaatt 34482935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 36865090 - 36865052
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36865090 gcaatgctatatattaaggaagattttattaagaaaatt 36865052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 455 - 489
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  455 caatgctatatattaagaaagattttatcaagaaa 489  Q
    ||||||||||||| |||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 33839533 - 33839569
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  33839533 gcaatgttatatattaagaaagattttatcaaaaaaa 33839569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 41224239 - 41224271
Alignment:
Q  458 tgctatatattaagaaagattttatcaagaaaa 490  Q
    ||||||||||||||||||||||| |||||||||    
T  41224239 tgctatatattaagaaagattttctcaagaaaa 41224271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 48861244 - 48861299
Alignment:
Q  30 aatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaaattcctatt 83  Q
    ||||||||||||||| |||||||||||||| |  ||||||||||||| || |||||    
T  48861244 aatatttaactttataaaagtcaaaaaattgttgtttttaatgaaaattttctatt 48861299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 31364970 - 31364915
Alignment:
Q  7 cattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattatt 62  Q
    ||||||||| | |||||||||  ||||||||| |||||||||||||||||||||||    
T  31364970 cattggaaattggtgaaaagtgaaatatttaattttatgaaagtcaaaaaattatt 31364915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 10661889 - 10661927
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10661889 gcaatgctatatatcaagaaagattttatcaagaaaatt 10661927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 21936083 - 21936121
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21936083 gcaatgctatatatcaagaaagattttatcaagaaaatt 21936121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 35160759 - 35160797
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  35160759 gcaatgctatatatcaagaaagattttatcaagaaaatt 35160797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 5963988 - 5964035
Alignment:
Q  20 tgaaaagtagaatatttaactttatgaaagtcaaaaaattatttttta 67  Q
    |||||||| |||||||||| ||||||||||| ||||||||||| ||||    
T  5963988 tgaaaagtggaatatttaattttatgaaagttaaaaaattattgttta 5964035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Complemental strand, 9293639 - 9293604
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaa 489  Q
    |||||||||||||| |||||||||||||||||||||    
T  9293639 gcaatgctatatatcaagaaagattttatcaagaaa 9293604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 489
Target Start/End: Original strand, 9723407 - 9723442
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaa 489  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9723407 gcaatgctatatattaagaaagattttattaagaaa 9723442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 7475571 - 7475533
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  7475571 gcaatgctatatatcaagaaagattttttcaagaaaatt 7475533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 13354848 - 13354886
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  13354848 gcaatgttatatatcaagaaagattttatcaagaaaatt 13354886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 14250564 - 14250659
Alignment:
Q  3 tttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa---attattttttaatgaaaaattcctattattacttccttaa 96  Q
    |||| ||||| |||| |||||||||| ||||| ||||||||||||| | |||||    ||||||||| || ||||||| ||||| ||||||||||||    
T  14250564 tttgtattgggaagtggtgaaaagtaaaatatctaactttatgaaaataaaaaagttgttatttttttat-aaaaatttctatttttacttccttaa 14250659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 23268125 - 23268087
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  23268125 gcaatgctatatatcaagaaagattttttcaagaaaatt 23268087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 33380209 - 33380247
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  33380209 gcaatgctatatatcaagaaagattttttcaagaaaatt 33380247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43470532 - 43470474
Alignment:
Q  1 attttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaatt 59  Q
    |||| ||||| | |||| || |||||| ||||||| |||||||||||||||||||||||    
T  43470532 atttggcattaggaagttgtaaaaagtggaatattcaactttatgaaagtcaaaaaatt 43470474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 16711902 - 16711861
Alignment:
Q  167 ttaaagaattataaaaagatatattttctcagaaattgtgta 208  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  16711902 ttaaagaattataaaaggaaatgttttctcagaaattgtgta 16711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 11623 - 11661
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11623 gcaatgctatatatcaagaaagattttatcaagaaaatt 11661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 6127277 - 6127315
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6127277 gcaatgctatatatcaagaaagattttatcaagaaaatt 6127315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 17705528 - 17705490
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17705528 gcaatgctatatatcaagaaagattttatcaagaaaatt 17705490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 23291147 - 23291109
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23291147 gcaatgctatatatcaagaaagattttatcaagaaaatt 23291109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 28675150 - 28675188
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28675150 gcaatgctatatatcaagaaagattttatcaagaaaatt 28675188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 33695390 - 33695352
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  33695390 gcaatgctatatatcaagaaagattttatcaagaaaatt 33695352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 33696698 - 33696736
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  33696698 gcaatgctatatatcaagaaagattttatcaagaaaatt 33696736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 10424696 - 10424820
Alignment:
Q  3 tttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaaattcctattattacttccttaaccgg 100  Q
    ||||||||||||| | || ||||||| ||| || ||| |||||||||||||||| ||||  ||||||  || ||||| ||||| || ||||| ||||| |    
T  10424696 tttgcattggaaattggtcaaaagtaaaattttcaaccttatgaaagtcaaaaagttattgtttttatcgagaaatttctatttttgcttccctaaccag 10424795  T
Q  101 tgcctcagggcactagttaacatga 125  Q
    |   ||| |||||||||||||||||    
T  10424796 tatgtcatggcactagttaacatga 10424820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27133938 - 27134012
Alignment:
Q  1 attttgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaa 73  Q
    ||||||||||| ||| | ||||||||| |||| ||||||| ||||||||| |||||||| |  ||||||||||||    
T  27133938 attttgcattgaaaattggtgaaaagtggaatgtttaactatatgaaagtaaaaaaattgttgtttttaatgaaa 27134012  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 17176084 - 17176046
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  17176084 gcaatgctatatatcaagaaagattttatcaataaaatt 17176046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 18365636 - 18365598
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  18365636 gcaatgctatatatcaagaaagattttatcaaaaaaatt 18365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 18370900 - 18370862
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  18370900 gcaatgctatatatcaagaaagattttatcaaaaaaatt 18370862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 25986932 - 25986970
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  25986932 gcaatgctatatatcaagaaagattttattaagaaaatt 25986970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 9062944 - 9062864
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaaattcctatt 83  Q
    ||||||||||| | ||||||||| |||| ||||||||||||||||  ||||| || |  ||||||||||||| || |||||    
T  9062944 tgcattggaaattggtgaaaagttgaatgtttaactttatgaaagataaaaagttgttgtttttaatgaaaattttctatt 9062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Complemental strand, 8515787 - 8515755
Alignment:
Q  455 caatgctatatattaagaaagattttatcaaga 487  Q
    ||||||||||||| |||||||||||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaaga 8515755  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 18404444 - 18404482
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18404444 gcaatgctatatatcaagaaagattttatcaagaaaatt 18404482  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 40214990 - 40215028
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40214990 gcaatgctatatatcaagaaagattttatcaagaaaatt 40215028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 16045859 - 16045823
Alignment:
Q  456 aatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatt 16045823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27858772 - 27858709
Alignment:
Q  19 gtgaaaagtagaatatttaactttatgaaagtcaaaaaattattttttaatgaaaaattcctatt 83  Q
    ||||||||| |||| ||||| ||||||||||||||||||||  |||||||| ||||||| |||||    
T  27858772 gtgaaaagttgaatgtttaagtttatgaaagtcaaaaaatt-gtttttaataaaaaatttctatt 27858709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 33776709 - 33776765
Alignment:
Q  19 gtgaaaagtagaatatttaactttatgaaagtcaaaaaattattttttaatgaaaaa 75  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||| || ||| |||||    
T  33776709 gtgaatagtggaatgtttaactttatgaaagtcaaaaaattattattaaataaaaaa 33776765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 44107720 - 44107768
Alignment:
Q  8 attggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaa 56  Q
    |||||||| | |||||||||||||| |||| ||||||||||||||||||    
T  44107720 attggaaattggtgaaaagtagaatgtttacctttatgaaagtcaaaaa 44107768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 6883489 - 6883527
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  6883489 gcaatgctatatattaagaaagatttttttaagaaaatt 6883527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 9910356 - 9910318
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  9910356 gcaatgctatatatcaagaaagattttttcaagaaaatt 9910318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 19015406 - 19015444
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  19015406 gcaatgctatatatcaagaaagattttttcaagaaaatt 19015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 25113842 - 25113880
Alignment:
Q  19 gtgaaaagtagaatatttaactttatgaaagtcaaaaaa 57  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25113842 gtgaaaaatagaatgtttaactttatgaaagtcaaaaaa 25113880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 25463678 - 25463716
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  25463678 gcaatgctatatatcaagaaagattttatgaagaaaatt 25463716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 35838412 - 35838359
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaatt 59  Q
    ||||||| ||| | |||||||||||||| || |||||||||||||||||||||||    
T  35838412 tgcattgaaaattggtgaaaagtagaatgtt-aactttatgaaagtcaaaaaatt 35838359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 36966771 - 36966733
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  36966771 gcaatgctatatatcaagaaagattttttcaagaaaatt 36966733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 37821897 - 37821859
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  37821897 gcaatgctatatatcaagaaagattttttcaagaaaatt 37821859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 44094700 - 44094738
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  44094700 gcaatgctatatatcaagaaatattttatcaagaaaatt 44094738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 3559620 - 3559657
Alignment:
Q  455 caatgctatatattaagaaagattttatcaagaaaatt 492  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaatt 3559657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 24084186 - 24084223
Alignment:
Q  22 aaaagtagaatatttaactttatgaaagtcaaaaaatt 59  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  24084186 aaaagtggaatgtttaactttatgaaagtcaaaaaatt 24084223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 5302452 - 5302381
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattat--tttttaatgaaaa 74  Q
    |||||||||||   ||||||| |  ||||||||||||||||||||| |||||||| |  |||||||||||||    
T  5302452 tgcattggaaatcggtgaaaaatgaaatatttaactttatgaaagttaaaaaattgttgtttttaatgaaaa 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 32000330 - 32000294
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaa 490  Q
    |||||||||||||| |||||||||||| |||||||||    
T  32000330 gcaatgctatatatcaagaaagattttctcaagaaaa 32000294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 36266 - 36326
Alignment:
Q  5 tgcattggaaagtagtgaaaagtagaatatttaactttatgaaagtcaaaaaattattttt 65  Q
    |||||||||||   ||||||| | |||| ||||||||||||||||||||||| ||||||||    
T  36266 tgcattggaaatcggtgaaaaatggaatgtttaactttatgaaagtcaaaaagttattttt 36326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 3070 - 3108
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  3070 gcaatgctatatatcaagaaagattttatcaataaaatt 3108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 12844 - 12882
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  12844 gcaatgctatatatcaagaaagattttttcaagaaaatt 12882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 4398 - 4436
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  4398 gcaatgctatatatcaagaaagattttttcaagaaaatt 4436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 41013 - 41051
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  41013 gcaatgctatatatcaagaaagattttatcaaaaaaatt 41051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 47852 - 47890
Alignment:
Q  454 gcaatgctatatattaagaaagattttatcaagaaaatt 492  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  47852 gcaatgctatttatcaagaaagattttatcaagaaaatt 47890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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