View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2663_low_7 (Length: 454)
Name: NF2663_low_7
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 314
Target Start/End: Complemental strand, 13780017 - 13779705
Alignment:
| Q |
2 |
atgagatggacatcatcatcccactttgaaccaaacaaactgttttgaatcccaaacatgacctaattaccttatttagttgctggaattacacgaggtc |
101 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13780017 |
atgagatgaaaatcaacatcccactttgaaccaaacgaactgttttgaatcccaaacatgacctaattaccttatttagttgctggaattacacgaggtc |
13779918 |
T |
|
| Q |
102 |
gggcacaaccttactacatgtctctttcgaaacaaatagtaacgatccatgcaaggcctaacagtggtaagatgcagaccatgataattcctatgttact |
201 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13779917 |
ggacacaaccttactacatgtctcttttgaaacaaatagtaacgatccatgcaaggcctaacagtggtaagatgcagaccatgataattcctacattact |
13779818 |
T |
|
| Q |
202 |
tgcgcccacttcttcgatgttgataatggtaactagaaagaaaataaatacaaacaaagtaatccagatgagaaaaaacttatccattttttgaactgtc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
13779817 |
tgcgcccacttcttcgatgttgataatggtaactagaaagaaaataaatacaaacaaagtaatctagatgagaaaaaacttatccattttttgtactgtg |
13779718 |
T |
|
| Q |
302 |
aacaaattgttta |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13779717 |
aacaaattgttta |
13779705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 438
Target Start/End: Complemental strand, 13777482 - 13777368
Alignment:
| Q |
319 |
ttcatacctcatttaattagatttaaaattacaattgaagttgaagcttgcaaaccaatgttaaggtaagaaaggtgaacaaaaaagttgtctctctaca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
13777482 |
ttcatacctcatttaattagatttaaaattacaattgaagttgaagcttgcaaaccaatgttaaggtaagaaaggtgaacaaaaatgttgtctccc---- |
13777387 |
T |
|
| Q |
419 |
acactttttcactcagtttt |
438 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13777386 |
-cactttttcactcagtttt |
13777368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University