View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2663_low_9 (Length: 444)
Name: NF2663_low_9
Description: NF2663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2663_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 92 - 434
Target Start/End: Original strand, 20465778 - 20466120
Alignment:
| Q |
92 |
ggagtatataggcaatgtcatacaagctaaatagctcataccaatccaaatacagatttgcttatgtttggattagtggtatagtgtgaaatggagtaga |
191 |
Q |
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| T |
20465778 |
ggagcatataggcaatgtcatacaagctcaatagctcgtaccaatccaaataaagatttgcttatgtttggattagtggtatagtgtgaaatggagtaga |
20465877 |
T |
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| Q |
192 |
atggaataggctagttagattttgaaaaagagatgctatctaattttcttgacaacataatgtgtaagagtgaagcaaaaccttggaaaaaattgtcaca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
20465878 |
atggaataggctagttagattttgaaaaagagatgctatctaattttcttgacaacataatgtgtaagagtgaaacaaaaccttggaaaaaatattcaca |
20465977 |
T |
|
| Q |
292 |
ttttgagagtaaatcaaaatggaaaaacaagtatgcaactatgcatggacaaagtatttcaaataactttatcatttatattttgcatagcattcactcg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20465978 |
ttttgagagtaaatcaaaatggaaaaacaagtatgcaactatgcatggacaaagtatttcagataactttatcatttatattttgcatagcattcactcg |
20466077 |
T |
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| Q |
392 |
atcatcttgcttcaaagtatttcatataacttgatctgttcat |
434 |
Q |
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| T |
20466078 |
atcatcttgcttcaaagtatttcatataacttgatctgttcat |
20466120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20465688 - 20465730
Alignment:
| Q |
1 |
tgtgtatatgatttgtcttactgctgtccactccttatccccc |
43 |
Q |
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| T |
20465688 |
tgtgcatatgatttgtcttactgctgtccactccttatccccc |
20465730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 6311521 - 6311580
Alignment:
| Q |
231 |
ctaattttcttgacaacataatgtgtaagagtgaagc-aaaaccttggaaaaaattgtca |
289 |
Q |
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||||||||||||||||||||| |||||||| |||| | ||||||||| ||| |||||||| |
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| T |
6311521 |
ctaattttcttgacaacataaagtgtaagaatgaaacaaaaaccttgaaaataattgtca |
6311580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 6311592 - 6311623
Alignment:
| Q |
287 |
tcacattttgagagtaaatcaaaatggaaaaa |
318 |
Q |
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| T |
6311592 |
tcacattttgagagtaaatcaaaatggaaaaa |
6311623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 33147593 - 33147562
Alignment:
| Q |
287 |
tcacattttgagagtaaatcaaaatggaaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33147593 |
tcacattttgagagtaaatcaaaatggaaaaa |
33147562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 33147664 - 33147605
Alignment:
| Q |
231 |
ctaattttcttgacaacat-aatgtgtaagagtgaagcaaaaccttggaaaaaattgtca |
289 |
Q |
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||||||||||||||||||| || |||||||| |||| |||||||||| ||| |||||||| |
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| T |
33147664 |
ctaattttcttgacaacataaaagtgtaagaatgaaacaaaaccttgaaaataattgtca |
33147605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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