View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2664-Insertion-1 (Length: 763)
Name: NF2664-Insertion-1
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664-Insertion-1 |
 | |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 9 - 763
Target Start/End: Original strand, 2014196 - 2014951
Alignment:
| Q |
9 |
ctacttcttgttgcagaaaggttttttgcctatgaataatccttgatgttaactatatttcttgttcatcaaggtggatatgcatgagattatttaaact |
108 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2014196 |
ctacttcctgttgcagaaaggttttt-gcctatgaataatccttgatgttaactatatttcttgttcatcaaggtggatatggatgagattatttaaact |
2014294 |
T |
|
| Q |
109 |
ttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatgatgatgtctaaatttgtgtgnnnnnnnctct--tctggaaaca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
2014295 |
ttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatgatgatgtctaaatttgtgtgtttttttctctcttctggaaaca |
2014394 |
T |
|
| Q |
207 |
agtattagtttttgtttgaatgtgagtgctgaagatgacaaatagttataaagagaaacaaaaattgaacctatatatatgcctttaaaggtggaattat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2014395 |
agtattagtttttgtttgaatgtgagtgctgaagataacaaatagttataaagagaaacaaaaattgaacctatatatatgcttttaaaggtggaattat |
2014494 |
T |
|
| Q |
307 |
tgtgaaaaattcaactaatcatcttccaccaacaaatgacattgtaatctggtttatgctgtatgattcagaagaataattattgccaccatctgtaaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014495 |
tgtgaaaaattcaactaatcatcttccaccaacaaatgacattgtaatctggtttatgctgtatgattcagaagaataattattgccaccatctgtaaca |
2014594 |
T |
|
| Q |
407 |
atgataggtgatgctgttctgagcaatgtatcagtttcttctgaagtctgatttccacttccccaacggtgctcttcaataactaatattccctccagtt |
506 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014595 |
atgataggtgatgttgttctgagcaatgtatcagtttcttctgaagactgatttccacttccccaacggtgctcttcaataactaatattccctccagtt |
2014694 |
T |
|
| Q |
507 |
ccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacctttctgcaataagggcaacctcctttagttgctcaatgttcgcctc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014695 |
ccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacctttctgcaataagggcaacctcctttagttgctcaatgttcgcctc |
2014794 |
T |
|
| Q |
607 |
gtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaacaaagtacaatgcaaggtttctatccaactctggcctgctaaaagat |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2014795 |
gtcaatatttttgtccaaaatatgaagtaactgaccatctttcattgaagaaacaaagtacaatgcaaggtttctatccaactctggcctgctaaaagat |
2014894 |
T |
|
| Q |
707 |
agtgccttctttcctgtcagtagctctgctagtacaactccaaagctatagacgtca |
763 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014895 |
agtgccttctttcctgccagtagctctgctagtacaactccaaagctatagacgtca |
2014951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 464 - 756
Target Start/End: Complemental strand, 40569084 - 40568792
Alignment:
| Q |
464 |
cttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacaccttt |
563 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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|
| T |
40569084 |
cttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgtt |
40568985 |
T |
|
| Q |
564 |
ctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaacaaa |
663 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| | || | || ||| ||||||||||||||||||||||| |||| |||||||| ||||||||||| |
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|
| T |
40568984 |
ctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctctttcattgaagaaacaaa |
40568885 |
T |
|
| Q |
664 |
gtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctata |
756 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
40568884 |
gtacgcggcaaggtttctatcaacctctggcctgcccaaagatagtgccttctttcctgtcagtagctctgctaggaccaccccaaaactata |
40568792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 464 - 756
Target Start/End: Complemental strand, 40573685 - 40573393
Alignment:
| Q |
464 |
cttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacaccttt |
563 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||| || |
|
|
| T |
40573685 |
cttccccaacgtcgctcttcaacaactaatattccctcaagttccattgccacttctttcatggttggtctgtcctcgcccttcacccttaaacaccgtt |
40573586 |
T |
|
| Q |
564 |
ctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaacaaa |
663 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| || ||||| || ||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
40573585 |
ctgcaatatgggcaacctcttttagttgctcaatatttgcctcatctatatttttgtccaaaatatgaagtaaccgaccctgtttcatcgaagaaacaaa |
40573486 |
T |
|
| Q |
664 |
gtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctata |
756 |
Q |
| |
|
||| |||||||||||||| | ||| ||||| | ||||||||| || |||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
40573485 |
gtatgcggcaaggtttctatcaacctcaggcctcccaaaagatagcgctttctttcctgtcagtagctctgctaggactactccaaatctata |
40573393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 462 - 756
Target Start/End: Complemental strand, 40580144 - 40579850
Alignment:
| Q |
462 |
cacttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacct |
561 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| || ||||| ||||| |||||||||| |||||||| |
|
|
| T |
40580144 |
cacttccccaacggaactcttcaataactaatattccctcaagttccattgccacttctttcatagttggtctgtcctctcccttcacccttaaacaccg |
40580045 |
T |
|
| Q |
562 |
ttctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaaca |
661 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||| || | ||| || ||||||||||||||||||||||||||| |||| | |||||| ||||||||| |
|
|
| T |
40580044 |
ttctgcaatatcggcaacctctttaagttgctcaatatttgtctcatctatatttttgtccaaaatatgaagtaaccgaccctgtttcattgaagaaaca |
40579945 |
T |
|
| Q |
662 |
aagtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctata |
756 |
Q |
| |
|
||||| | |||||||||||| | ||||||||||| ||||||||||||||||||||| || ||||||||||||| || |||||||| ||||| |
|
|
| T |
40579944 |
aagtatgcggaaaggtttctatctacctctggcctgccaaaagatagtgccttctttcccgttagtagctctgctatgactactccaaatctata |
40579850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 478 - 763
Target Start/End: Complemental strand, 40598578 - 40598293
Alignment:
| Q |
478 |
ctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacctttctgcaataagggca |
577 |
Q |
| |
|
||||||| |||||||||||||||| ||| || |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
40598578 |
ctcttcagtaactaatattccctctagtcccattgccacttctttcatggttggtctttcctcactcttcacccttaaacacctttctgcaattagggca |
40598479 |
T |
|
| Q |
578 |
acctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaacaaagtacaatgcaaggt |
677 |
Q |
| |
|
|| |||||||| || ||||| || ||| || ||||||||||| | |||||||||||| ||| | ||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
40598478 |
acttcctttagatgttcaatatttttctcatctatatttttgtctagaatatgaagtaattgatcctctttaatccaagacacaaagtacattgcaaggt |
40598379 |
T |
|
| Q |
678 |
ttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctatagacgtca |
763 |
Q |
| |
|
||||||| | ||||||||||| |||||||| |||||| | |||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
40598378 |
ttctatctacctctggcctgccaaaagataatgccttttctcctgttagtagctctgctaggacaactccgaagctatagacgtca |
40598293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 478 - 759
Target Start/End: Complemental strand, 40591976 - 40591695
Alignment:
| Q |
478 |
ctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacctttctgcaataagggca |
577 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
40591976 |
ctcttcaataactaatattccttccagttccattgccacttctttcatggatggtctttcctcactgttcacccttaaacacctttctgcaattagggca |
40591877 |
T |
|
| Q |
578 |
acctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaacaaagtacaatgcaaggt |
677 |
Q |
| |
|
|| |||||||| ||||||| || || | || || || |||||| |||||||| |||| || | |||||||| |||||||||||||||| |||||| |
|
|
| T |
40591876 |
acttcctttagatgctcaacatttcccgcatcgatgttgctgtccagaatatgaactaaccgatcttctttcattgaagaaacaaagtacatcgcaaggc |
40591777 |
T |
|
| Q |
678 |
ttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctatagac |
759 |
Q |
| |
|
|||| || | | |||| |||||| || ||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
40591776 |
ttctttctaccactggtctgctataacatagtgctttctttcctgtcagtagctctgctaggacaaccccaaagctgtagac |
40591695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 462 - 756
Target Start/End: Complemental strand, 40602642 - 40602348
Alignment:
| Q |
462 |
cacttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacacct |
561 |
Q |
| |
|
|||||||| || | |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||| | ||||||||| |
|
|
| T |
40602642 |
cacttcccaaaggctgctcttcaataactaatattccctctagttccactgccacttctttcatggtcggtctttcctcactgttcatctttaaacacct |
40602543 |
T |
|
| Q |
562 |
ttctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatctttcatcgaagaaaca |
661 |
Q |
| |
|
||||||||| | |||||| |||||||| || |||| | || ||||| | |||||| ||||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
40602542 |
ttctgcaattatggcaacttcctttagatgatcaacatcttcccaatcaatgctgctgtccagaatatgaagcaactgatcttctttcattgaagaaaca |
40602443 |
T |
|
| Q |
662 |
aagtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaactccaaagctata |
756 |
Q |
| |
|
|| | || ||||||| |||| || | ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
40602442 |
aaatgcattgcaaggcttctttctacatctggcctgctaaaacatagtgctttctttcctgtcaatagctctgctagaacaaccccaaagctata |
40602348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 40569243 - 40569177
Alignment:
| Q |
317 |
tcaactaatcatcttccaccaacaaatgacattgtaatctggtttatgctgtatgattcagaagaat |
383 |
Q |
| |
|
||||| |||||||||||||||| |||||||| | ||||||||||| ||| |||||||||||||||| |
|
|
| T |
40569243 |
tcaaccaatcatcttccaccaatcaatgacatcgaaatctggtttaagctatatgattcagaagaat |
40569177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 40573844 - 40573778
Alignment:
| Q |
317 |
tcaactaatcatcttccaccaacaaatgacattgtaatctggtttatgctgtatgattcagaagaat |
383 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||| ||| || |||||| |||||| |
|
|
| T |
40573844 |
tcaactaatcatcttccaccaatcaatgacatcgaaatctggtttaagctataggattcataagaat |
40573778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 646 - 759
Target Start/End: Original strand, 14029473 - 14029586
Alignment:
| Q |
646 |
tttcatcgaagaaacaaagtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgtcagtagctctgctagtacaact |
745 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || | | ||| ||| | ||||||| ||| || |||| ||| |||||||||||||| ||||| |
|
|
| T |
14029473 |
tttcattgaagaaacaaagtacattgcaaggtttctttctaccactgacctacaaaaagatggtgttttatttcgtgtgagtagctctgctaggacaacc |
14029572 |
T |
|
| Q |
746 |
ccaaagctatagac |
759 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
14029573 |
ccaaaactatagac |
14029586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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