View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664-Insertion-2 (Length: 644)
Name: NF2664-Insertion-2
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 88 - 638
Target Start/End: Complemental strand, 40661967 - 40661416
Alignment:
| Q |
88 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
187 |
Q |
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| T |
40661967 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
40661868 |
T |
|
| Q |
188 |
gttctgtggtgtcttgagttaactttcatgtttccatcaagtgttttattgacagaaaatttagctatattaattagtactttagcaatatatttgagac |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40661867 |
gttctgtggtgtcttgagttaactttcatgtttccatcaagtgttttattgacagaaagtttagctatattaattagtactttagcaatatatttgagac |
40661768 |
T |
|
| Q |
288 |
aggttatttggcagtttagttaatcatttttcttagaccccctttcttacagtagctcattttcaactttaaataaaatccattttttcatatatcctgc |
387 |
Q |
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| T |
40661767 |
aggttatttggcagtttagttaatcatttttcttagaccccctttcttacagtagctcattttcaactttaaataaaatccattttttcatatatcctgc |
40661668 |
T |
|
| Q |
388 |
tgcaaaatgagcaaagatatattctgtgattgttatgcaaaaatatgaatgaatttggttcaaccagacttgcagattctgcacaaaacagactggctta |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40661667 |
tgcaaaatgagcaaagatatattctgtgattgttatgcaaaaatatgaatgaatttggttcaaccagacttgcagattctgcacaaaacagactggctta |
40661568 |
T |
|
| Q |
488 |
tgctttcagcttgtacaacacccttccaggacccactcctccagtgcacataatctgccatactaatgaactcacacaaattttcaccatcatcaacaca |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
40661567 |
tgctttcagcttgtacaacacccttccaggacccactcctccagtgcacataatctgccatactaatgaactcacacaaattgtaaccatcatcaacaca |
40661468 |
T |
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| Q |
588 |
caccccaaaa-tttatacttaggcaaaccattctgcagcattcatcaacaaa |
638 |
Q |
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| T |
40661467 |
caccccaaaattttatacttaggcaaaccattctgcagcattcatcagcaaa |
40661416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 40675523 - 40675292
Alignment:
| Q |
88 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattctg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40675523 |
gagaggctgaagcaaggagtctctgcacctggagagtaaaggcattttactcaaatgttctgttgaatgtggattaccttgtactttttaaagaattctg |
40675424 |
T |
|
| Q |
188 |
gttctgtggtgtcttgagttaactttcatgtttccatcaagtgttttattgacagaaaatttagctatattaattagtactttagcaatatatttgagac |
287 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
40675423 |
gttctgtggtgtcttaagt--actttcatgtttccatcctgtgttttattgacagaaagtttagctatattaattagtactttagcaacatatttgggac |
40675326 |
T |
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| Q |
288 |
aggttatttggcagtttagttaatcatttttctt |
321 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
40675325 |
aggttatttggtggtttagttaatcatttttctt |
40675292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 40656691 - 40656503
Alignment:
| Q |
88 |
gagaggctgaagcaaggagtctctgcacctggagagtagaggcactgtactcaaatgttctgttgaatgtggattaccttgtactttttcaagaattct- |
186 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
40656691 |
gagagactgaagcaaggagtctctgcacctggagagtaggggcaatgtactcaaatgttctacggaatgtggattaccttgtacttttt-aaacattcta |
40656593 |
T |
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| Q |
187 |
ggttctgtggtgtcttgagttaactttcatgtttccatcaagtg-----ttttattgacagaaaatttagctatattaattagtactttagcaata |
277 |
Q |
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| T |
40656592 |
tgttctgt------ttaagttaactttcatgttttcgtcctgtgtgttattgtattgacagaaagtttagctatattaattagtactttagcaata |
40656503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40662048 - 40662007
Alignment:
| Q |
7 |
aattatgcgctctacgtctatgcacagaaggccctccctccc |
48 |
Q |
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| T |
40662048 |
aattatgcggtctacgtctatgcacagaaggccctccctccc |
40662007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 40675604 - 40675564
Alignment:
| Q |
7 |
aattatgcgctctacgtctatgcacagaaggccctccctcc |
47 |
Q |
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| T |
40675604 |
aattacgcgctctacgtttatgcacagaaggccctccctcc |
40675564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 40656772 - 40656732
Alignment:
| Q |
7 |
aattatgcgctctacgtctatgcacagaaggccctccctcc |
47 |
Q |
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||||||||||| || || ||||||||||||||||||||||| |
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| T |
40656772 |
aattatgcgctttatgtttatgcacagaaggccctccctcc |
40656732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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