View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664-Insertion-3 (Length: 599)
Name: NF2664-Insertion-3
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 138 - 596
Target Start/End: Original strand, 34590700 - 34591179
Alignment:
| Q |
138 |
gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagcaatcatagtgaaaatga---------------------tgaaaggcaac |
216 |
Q |
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| T |
34590700 |
gtcactaataatgaaatgagcaacacaaacaaggtaacctacaacgcaagcaatcatagtgaaaatgaaaatgagcctgaagtaaataatgaaaggcaac |
34590799 |
T |
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| Q |
217 |
ctgaaattgatgagcaaaaaatgttgtagtatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaagcagaagccctgcatat |
316 |
Q |
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| T |
34590800 |
ctgaaattgatgagcaaaaaatgttatagcatctgattctgaaaatagcaatgatgaaaattaggatttggggaaaaggctaagcagaagccctgcatat |
34590899 |
T |
|
| Q |
317 |
ctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaacatcgtatgaataatttg |
416 |
Q |
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| T |
34590900 |
ctggatgattatgacactacaaaagctactaaagcacaatctctccataatcttgttgtattcagctccagtgaagatccaacatcatatgaataatttg |
34590999 |
T |
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| Q |
417 |
ctaagcatggtcatctaagaaacaacctataataactctttccactactaaggcagagtacatggcaactgctagcagtgtatgtcatgtagtatggttt |
516 |
Q |
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| T |
34591000 |
ctaagcatggtcatctaagaaacaacctataataactctttccactactgaggcagagtacatggcaactgctagcagtgtatgtcatgtagtatggttt |
34591099 |
T |
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| Q |
517 |
taaggatcttagtttaaattcgaagtaattaaggggactgcatcaccattcactgtgacaatagttcaccaacaaagttg |
596 |
Q |
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| T |
34591100 |
taaggatcttagtttaaattggaagtaattaaggggactgcatcaccattcactgtgacaatagttcatcaacaaagttg |
34591179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 34589986 - 34590059
Alignment:
| Q |
8 |
atttaattatgttgttttctcaatagaagaattgaatgatgcaactacgatgacaattgacgagttacaaagta |
81 |
Q |
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| T |
34589986 |
atttaattatgttgttttctcaatagaagaattgaatgatgcaactacgatgacaattgacgagttacaaagta |
34590059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 34590668 - 34590701
Alignment:
| Q |
76 |
aaagtatacaagttgaataatcaaaacaatgggt |
109 |
Q |
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| T |
34590668 |
aaagcatacaagttgaataatcaaaacaatgggt |
34590701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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