View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664-Insertion-5 (Length: 449)
Name: NF2664-Insertion-5
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 19197430 - 19197285
Alignment:
| Q |
7 |
atgaagtatgtaaatacagttgcagacagagcgagagccaaggctaaggaatgccgcccnnnnnnngaaaaggtacaag------ggaaggcaagtacaa |
100 |
Q |
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| T |
19197430 |
atgaagtatgtaaatatagttgcagacagagcgagagccaaggctaaggaatgccgcccaaaaaaagaaaagttacaagtaaaagggaaggcaagtacaa |
19197331 |
T |
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| Q |
101 |
ttccaagtgcggagttacttgaagagttaattgacaaatatccagt |
146 |
Q |
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| T |
19197330 |
ttccaagtgcggagttacttgaagagttaattgacaaatatccagt |
19197285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 19197300 - 19197196
Alignment:
| Q |
161 |
ttgacaaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgat |
260 |
Q |
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| T |
19197300 |
ttgacaaatatccagtagttttagaagcaaagatctaagtggttgtacatagttctatcaatagctcttagtcatcattaatactaaaacaataaatgat |
19197201 |
T |
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| Q |
261 |
gctat |
265 |
Q |
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||||| |
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| T |
19197200 |
gctat |
19197196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 19201379 - 19201281
Alignment:
| Q |
165 |
caaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgatgct |
263 |
Q |
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| T |
19201379 |
caaacatcaaggagtttgagaggcaaagatctaagtgcttgtacatagttctatctatagctcttactcatcatttatgctcaaacaatacatgatgct |
19201281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 19201533 - 19201478
Alignment:
| Q |
7 |
atgaagtatgtaaatacagttgcagacagagcgagagccaaggctaaggaatgccg |
62 |
Q |
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| T |
19201533 |
atgaagtatgtaaatctagttgcagacggcgcgagagccaaggctgaggaaagccg |
19201478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 19197548 - 19197495
Alignment:
| Q |
9 |
gaagtatgtaaatacagttgcagacagagcgagagccaaggctaaggaatgccg |
62 |
Q |
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| T |
19197548 |
gaagtatgtaaatctagttgcagacggagcgatagccaaggctgaggaaagccg |
19197495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 286 - 449
Target Start/End: Original strand, 13460657 - 13460823
Alignment:
| Q |
286 |
gtggcactgacacgtcattacgtggcactgcc---atgtcattattattattttnnnnnnnnnnnncttcagaatttctttttaatggttctttccaaaa |
382 |
Q |
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| T |
13460657 |
gtggcactgacacgtcattacgtggcactgccgccacgtcattattattatttttttttaaaaaaacttcaaaatttctgtttaatggttctttccaaaa |
13460756 |
T |
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| Q |
383 |
tattaattgaacattattatcaaaatacccttannnnnnnaattaattaaaa-ataactatttctctc |
449 |
Q |
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| T |
13460757 |
tattaattgaatattattaccaaaataccctta-ttttttaattaattaaaagataactatttctctc |
13460823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 14913611 - 14913658
Alignment:
| Q |
349 |
cttcagaatttctttttaatggttctttccaaaatattaattgaacatt |
397 |
Q |
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| T |
14913611 |
cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt |
14913658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 7346878 - 7346925
Alignment:
| Q |
349 |
cttcagaatttctttttaatggttctttccaaaatattaattgaacatt |
397 |
Q |
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| T |
7346878 |
cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt |
7346925 |
T |
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