View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664-Insertion-6 (Length: 253)
Name: NF2664-Insertion-6
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664-Insertion-6 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 379859 - 380104
Alignment:
| Q |
8 |
ggttcaccatggaattgacgccatacaaatatttttaagcactttnnnnnnnnntgaagtaccgatgacaaaattcaagaatgattgttgtgttgtgatg |
107 |
Q |
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| T |
379859 |
ggttcaccatggaattgacgccatacaaatatttttaagcactttaaaaaaaaatgaagtaccgatgacaagattcaagaatgattgttgtgttgtgatg |
379958 |
T |
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| Q |
108 |
cgtgatgagtcatgggaataaaatgggtttaagaactatgttttgtaataaataaattttgtggtgccaaaaggatttgtttatatatgtagtgtatcac |
207 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
379959 |
cgtgacgagtcatgggaatagaatgggtttaagaactatgttttgtaataaataaattttgtggtgccaaaaggatttgttcatacatgtagtgtatcac |
380058 |
T |
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| Q |
208 |
tcttggaagcatacggatgaaaatctgagccacaaataggtgttag |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380059 |
tcttggaagcatacggatgaaaatctgagccacaaataggtgttag |
380104 |
T |
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