View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-1 (Length: 923)
Name: NF2664R-Insertion-1
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 337 - 696
Target Start/End: Original strand, 35757205 - 35757562
Alignment:
| Q |
337 |
taattaaaaagaaataatttggtccctcggcattaggtttgtgtcgaaataaacacatttgcacgattagagctagttttttcaaaaatgccgttagtag |
436 |
Q |
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| T |
35757205 |
taattaaaaagaaataatttggtccctcggcattaggtttgtgtcgaaataaacacatttgcacgattagagctagttttttcaaaaatgccgttagtag |
35757304 |
T |
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| Q |
437 |
gaatcaattttgaataccttcaatattaacataannnnnnnnnnnnnnngagggaatgttaacataaacttgaatttggtgttttatcaaagtt-aattc |
535 |
Q |
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| T |
35757305 |
gaatcaattttgaataccttcaatattaacataatttttttttttttt-gagggaatgttaacataaacttgaatttggtgttttatcaaagtttaattc |
35757403 |
T |
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| Q |
536 |
tacttattcattgaagcatgcaagtttattcaagaattactttttggcctaaccaacaagttgtgtaaaccctcacatctacgttattggtaattgcatt |
635 |
Q |
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| T |
35757404 |
tacttattcattgaagcatgcaagtttattcaagaattactttttggcctaaccaacaagttgcgtaaacccccacatctaggttattggtaattgcatt |
35757503 |
T |
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| Q |
636 |
ttacacnnnnnnnngcatgaaaatgatcaaggtcatttttctttgggaaatgttaactagt |
696 |
Q |
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| T |
35757504 |
ttacac--ttttttgcatgaaaatgatcaaggtcatttttcgttgggaaatgttaactagt |
35757562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 35756674 - 35756859
Alignment:
| Q |
8 |
aaccttactgttgggagtgagtcgctgcaaatgtacggcgccatgtttatatttgtttgttgaaaagttcacacaaacaaacgttttagtccttgagaac |
107 |
Q |
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| T |
35756674 |
aaccttactgttgagagtgagtcgctgcaaatgtacggcgccatgtttatgtttgtttgttgaaaagttcacacaaacaaacgttttagtccttgagaac |
35756773 |
T |
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| Q |
108 |
aaaatttgacacgagagaaaaataaaagtaatttttatttcgtgaaaagtaaaagtcaacttaacccttatgtgaatcatcatcag |
193 |
Q |
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| T |
35756774 |
aaaatttgacactagagaaaaataaaagtaatttttatttcgtgaaaagtaaaagtcaacttaacccttatgtgaatcatcatcag |
35756859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 259 - 344
Target Start/End: Original strand, 35756934 - 35757019
Alignment:
| Q |
259 |
acaagaattctaaccatagttaaaaagagataatttcccttaaaaaatagagataatttattctcccacaataataattaattaaa |
344 |
Q |
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| T |
35756934 |
acaagaattctaaccatagttaaaaagagataatttcccttaaaaaatagagataatttattctcccacaataataattaattaaa |
35757019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 749 - 825
Target Start/End: Original strand, 35757874 - 35757950
Alignment:
| Q |
749 |
gttcaagttgagaagatgaaggttggttctatattttgaaaacccaatgagaaaagtaatatgcaatttggtagttg |
825 |
Q |
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| T |
35757874 |
gttcaagttgagaagatgaaggttggttctatattttgaaaacccaatgagaaaagtaatatgcaatttggtagttg |
35757950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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