View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-10 (Length: 275)
Name: NF2664R-Insertion-10
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 20426318 - 20426584
Alignment:
| Q |
9 |
atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat |
108 |
Q |
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| T |
20426318 |
atttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat |
20426417 |
T |
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| Q |
109 |
gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagagacccttagacat |
208 |
Q |
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| T |
20426418 |
gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagatacccttagacat |
20426517 |
T |
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| Q |
209 |
accttcagacatagataccaatttgagtgttagattaacaaagagacatttggtggtattgaatgga |
275 |
Q |
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| T |
20426518 |
acctttagacataggtaccaatttgagttttagattaacaaagagacatttggtggtattgaatgga |
20426584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 20455796 - 20455573
Alignment:
| Q |
9 |
atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgctggagtggtagttcaaatgagcgattgtacttgaatggaatat |
108 |
Q |
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|||||||||||| |||||||||||||||||| || |||||||||||||||||| || |||| | |||||||||||| ||||||||| || ||||||||| |
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| T |
20455796 |
atttatagtgtaagatgtaactcttggaggacacatgatttcaatatgcctaaatgttggaccgatagttcaaatgatcgattgtacatggatggaatat |
20455697 |
T |
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| Q |
109 |
gtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgactttagcaatgaga-tgttttttacaacagagagacccttagaca |
207 |
Q |
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| T |
20455696 |
gtcattggtggtatgtaactgaagatcggggtgaacattttttggtgtcgttttactat-gcaatgagagttttttttacaacacatatacccttagaca |
20455598 |
T |
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| Q |
208 |
taccttcagacatagataccaattt |
232 |
Q |
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| T |
20455597 |
taacttcggacatatatcccaattt |
20455573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 4877557 - 4877608
Alignment:
| Q |
9 |
atttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgccta |
60 |
Q |
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| T |
4877557 |
atttatagtctaagaagtaactcttggaagaaacttgatttcaatatgccta |
4877608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 20452920 - 20452989
Alignment:
| Q |
145 |
attttttggtgtcatttgactttagcaatgagatgttttttacaacagagagacccttagacataccttca |
215 |
Q |
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| T |
20452920 |
attttttggtgtcatttaacttaagcaatgaagtgtttttaacaaca-acatacccttagtcataccttca |
20452989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 44938041 - 44937953
Alignment:
| Q |
138 |
gatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagagacccttagacataccttcagacatagatac |
226 |
Q |
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| T |
44938041 |
gatgaacatttattagtttcatttgatttgaacaatgagatgttttttacaacatccatacccatagacatacctttagacatagatac |
44937953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 44912848 - 44912810
Alignment:
| Q |
24 |
tgtaactcttggaggaaacttgatttcaatatgcctaat |
62 |
Q |
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| T |
44912848 |
tgtaactcttggagtaaacttgatatcaatatgcctaat |
44912810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 51869830 - 51869909
Alignment:
| Q |
138 |
gatggacattttttggtgtcatttgactttagcaatgagatgttttttacaacagagagacccttagacataccttcaga |
217 |
Q |
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| T |
51869830 |
gatgaacatttcttggtgtcatttaacttgagcaatgagttgtttttaacaacaatcatacccttagacatgccttcaga |
51869909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Complemental strand, 22535421 - 22535391
Alignment:
| Q |
151 |
tggtgtcatttgactttagcaatgagatgtt |
181 |
Q |
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| T |
22535421 |
tggtgtcatttgactttagcaatgagatgtt |
22535391 |
T |
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