View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-2 (Length: 922)
Name: NF2664R-Insertion-2
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 325 - 823
Target Start/End: Original strand, 43614617 - 43615112
Alignment:
| Q |
325 |
caagaaagaaaaattagatatgacaacttgtttttgaaactcttaattataaaactttgacatattagcaacaaaaggtaagttttatttattttacaaa |
424 |
Q |
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| T |
43614617 |
caagaaagaaaaattagatatgacaaattgtttttgaaactcttatttataaa-ctttgacatattagcaacaaacggtaagttttatttattttacaaa |
43614715 |
T |
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| Q |
425 |
gcatgttcgtgnnnnnnnnnnnctcctatttataatcaagtgatcgaacttaggtgtttaatgaattttattcaataacgaatcgttgaagaattgatgg |
524 |
Q |
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| T |
43614716 |
gcatgttcgtgaaaaaaaaa--ctcttatttacaatcaagtgatcgaacttaggtgtttaatgaattttattcaataacgaatcgttgaagaattgatgg |
43614813 |
T |
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| Q |
525 |
atttattgatggaataattcttggctaactttatttacctcctgttgaattctgaattattttgaccctattnnnnnnnnnnnnn-ctcttatttatgtg |
623 |
Q |
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| T |
43614814 |
atttattgatggaataattcttggctaactttatttacctcccgttgaattctgaattattttgaccctattaaaaaaaaaaaaaactcttatttatgtg |
43614913 |
T |
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| Q |
624 |
cttttgtgtgttgctggacgaaaaattgagaaaaacaggcaagacatttgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaagga |
723 |
Q |
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| T |
43614914 |
cttttgtgtgttgctggacgaaaaattgagaaaaacaggcaagacatttgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaagga |
43615013 |
T |
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| Q |
724 |
accaaagaagacattgatgttgctgtaaaggcagctcgttatgcatttgactttggtccttggccccgcctgcctgggtgctgtatgttatttttccttc |
823 |
Q |
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| T |
43615014 |
accaaagaagacattgatgttgctgtaaaggcagctcgttatgcatttgactttggtccttggccccgcctgcct-ggtgctgtatgttatttttccttc |
43615112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 43614422 - 43614552
Alignment:
| Q |
130 |
acaaattgacatgattctatctataaataacaaagttttgcgtttttatttaacttgaatgataaatagttgcctcaacaaatatggtaataataacact |
229 |
Q |
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| T |
43614422 |
acaaattgacatgattctatctataaataacaaagttttgcgtttttatttaacttgaatgataaatagttgcctcaacaaatatggtaataataacact |
43614521 |
T |
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| Q |
230 |
gacacatcagtcatgctataaccatcatgtt |
260 |
Q |
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| T |
43614522 |
gacacatcagtcatgctataaccatcatgtt |
43614552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 43614317 - 43614387
Alignment:
| Q |
9 |
attttgtggattcggttacaggtcaatactataataatatatttccatttattttgttcacactagtgcta |
79 |
Q |
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| T |
43614317 |
attttgtggattcggttacaggtcaatactataataatatatttccatttattttgttcacactagtgcta |
43614387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 836 - 890
Target Start/End: Original strand, 43615147 - 43615201
Alignment:
| Q |
836 |
atatatatactactatgttgatattaaataaattattttagacaagaaatttgga |
890 |
Q |
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| T |
43615147 |
atatatatactactatgttgatattaaatgaattattttagacaaaaaatttgga |
43615201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 667 - 791
Target Start/End: Original strand, 43626085 - 43626209
Alignment:
| Q |
667 |
acatttgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaaggaaccaaagaagacattgatgttgctgtaaaggcagctcgttatg |
766 |
Q |
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| T |
43626085 |
acatttgaaacaatagacccaagaacaggagatgtgattgcaagaataagtgaaggagcaaaagaagacattgaaattgcagttaaagcagcacgtgaag |
43626184 |
T |
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| Q |
767 |
catttgactttggtccttggccccg |
791 |
Q |
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| T |
43626185 |
catttgattcaggtccatggccccg |
43626209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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