View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-3 (Length: 900)
Name: NF2664R-Insertion-3
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 123 - 900
Target Start/End: Complemental strand, 19890384 - 19889619
Alignment:
| Q |
123 |
aacaaaattatctatatacctaccaggttatatatataagtataaataagtcttccaagagtattaatcaatgtagcccgacaaagagtcgtcagaatcg |
222 |
Q |
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| T |
19890384 |
aacaaaattatctatatacctaccaggttatata----------aataagtcttccaagagtattaatcaatgtagcccgacaaagagtcgtcagaatcg |
19890295 |
T |
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| Q |
223 |
gactcttcatcatttggcactagtacaggcttttcagtaattgttggtggcagatcatctctggacaattcaacttcaccactttcatcagctatggtta |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
19890294 |
gactcttcatcatttggcactagtacaggcttttcagtaattgttggtggcatatcatctctggacagttcaacttcaccattttcatcagctatggtta |
19890195 |
T |
|
| Q |
323 |
aatttataacatgatctaatggttgactttgatagggttcttgggcagttgaatttgacccttctttcatattaaagaagtctctaggaacagtactcat |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890194 |
aatttataacatgatctaatggttgactttgatagggttcttgggcatttaaatttgacccttctttcatattaaagaagtctctaggaacagtactcat |
19890095 |
T |
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| Q |
423 |
aacataattcctattttcattgtagggatcttgaacgtagaagcattggtggatttgagaggccaacacaaaaggatcatctttataacatcttttatta |
522 |
Q |
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| T |
19890094 |
aacataattcctattttcattgtagggatcttgaacgtagaagcattggtggacttgagaggccaacacaaaaggatcaactttataacatcttttatta |
19889995 |
T |
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| Q |
523 |
aactggacacaagtcatcccatactttgttttgtcttcaacttcataccaatcacatctaaataacaccaacttttcacaacaatctacctcaattatat |
622 |
Q |
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| T |
19889994 |
aactggacacaagtcatcccatacttttttttgtcttcaacttcataccaatcacatctaaataacaccaactttccacaacaatctacctcaattatat |
19889895 |
T |
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| Q |
623 |
ctataattgatccgtaataagttaatggttttgttatcggattttcatctttcgtgcttgcaaagctttgggtcatcgacaccaatgtaacgccactatt |
722 |
Q |
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| T |
19889894 |
ctataatcgatccataataagttaatggttttgttatcggattttcatctttcgtgcttgcaaagctttgggtcatcgacaccaatgtaacgccactatt |
19889795 |
T |
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| Q |
723 |
ttgtgttttccttcttgcatcacgttgtttagtatgaaacctataaccattaataacaaaacctgaaaatctcctagcaacgacatttgggtcctcttga |
822 |
Q |
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| T |
19889794 |
ttgtgttttccttctggcatcacgttttttagtatgaaacctataaccattaataacaaaacctgaaaatctcctagcaacgacattt-ggtcctcttga |
19889696 |
T |
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| Q |
823 |
caactctttaagttcatcagttacatcatccatcccaagtacgaattttgaaccattcaatgaaatcatgcccctgcc |
900 |
Q |
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| T |
19889695 |
caactctttaagttcatcagatacatcatccat-ccaagtacgaattttgaaccattcaatgaaatccttcccctgcc |
19889619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 279 - 745
Target Start/End: Complemental strand, 24242295 - 24241828
Alignment:
| Q |
279 |
atctctggacaattcaacttcaccactttcatcagctatggttaaatttataacatgatctaatggttgactttgatagggttcttgggcagttgaattt |
378 |
Q |
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| T |
24242295 |
atctctggacaattcaacttcaccattttcatcagctatggttaaatttataacatgatctaatggttgactttgataaggttcttgggcatttgaattt |
24242196 |
T |
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| Q |
379 |
gacccttctttcatattaaagaagtctctaggaacagtactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggattt |
478 |
Q |
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| T |
24242195 |
gacccttttttcatattaaagaagtctctaggaacaatactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggactt |
24242096 |
T |
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| Q |
479 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatac-tttgttttgtcttcaacttcataccaatcac |
577 |
Q |
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| T |
24242095 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaattggacacaagtcgtcccatactttttttttgtcttcaacttcataccaatcac |
24241996 |
T |
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| Q |
578 |
atctaaataacaccaacttttcacaacaatctacctcaattatatctataattgatccgtaataagttaatggttttgttatcggattttcatctttcgt |
677 |
Q |
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| T |
24241995 |
atctaaataacaccaactttccacaacaatctacctcaattatatctataatcgatccataataagttaatggttttgttatcggattttcatctttcgt |
24241896 |
T |
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| Q |
678 |
gcttgcaaagctttgggtcatcgacaccaatgtaacgccactattttgtgttttccttcttgcatcac |
745 |
Q |
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| T |
24241895 |
gcttgcaaagctttgggtcatcgacaccaatgtaacgccactatttcgtgttttccttcttgcatcac |
24241828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 448 - 596
Target Start/End: Complemental strand, 19310341 - 19310196
Alignment:
| Q |
448 |
ggatcttgaacgtagaagcattggtggatttgagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatact |
547 |
Q |
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||||||| ||||||||| |||||||||| |||||| ||||| |||||||| ||||| | |||||||| || || || | |||||||||| |||| ||| |
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| T |
19310341 |
ggatcttcaacgtagaaacattggtggacttgagaagccaatacaaaagggtcatccatgtaacatctcttgttgaaataaacacaagtcaacccaaact |
19310242 |
T |
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| Q |
548 |
ttgttttgtcttcaacttcataccaatcacatctaaataacaccaactt |
596 |
Q |
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|| | |||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
19310241 |
tt---tcctcttcagcttcaaaccaatcacatctaaataacacaaactt |
19310196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 596
Target Start/End: Complemental strand, 13253177 - 13253032
Alignment:
| Q |
448 |
ggatcttgaacgtagaagcattggtggatttgagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatact |
547 |
Q |
| |
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||||||| ||||||||| |||||||||| |||||| || || ||||||||||| || | |||||||| || || || | |||||||||| |||||| |
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| T |
13253177 |
ggatctttaacgtagaaacattggtggacttgagaagcaaatacaaaaggatcgtccatgtaacatctcttgttgaaataaacacaagtcaacccata-- |
13253080 |
T |
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| Q |
548 |
ttgttttgtcttcaacttcataccaatcacatctaaataacaccaactt |
596 |
Q |
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| T |
13253079 |
-tttttcctcttcaacttcaaaccaatcacatttaaatagcacaaactt |
13253032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 482
Target Start/End: Original strand, 23491999 - 23492087
Alignment:
| Q |
394 |
ttaaagaagtctctaggaacagtactcataacataattcctattttcattgtagggatcttgaacgtagaagcattggtggatttgaga |
482 |
Q |
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||||| || ||||| || ||||| |||||||||||| |||||||||||||||||||||| || || || |||||||||| |||||| |
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| T |
23491999 |
ttaaacaaatctctcggcacagtcttcataacataatgtttattttcattgtagggatcttggacataaaaacattggtggacttgaga |
23492087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 791
Target Start/End: Original strand, 23492328 - 23492399
Alignment:
| Q |
720 |
attttgtgttttccttcttgcatcacgttgtttagtatgaaacctataaccattaataacaaaacctgaaaa |
791 |
Q |
| |
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|||||| ||||| | |||||||||||||| |||| ||||| ||||||||||| |||||| |||||||||| |
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| T |
23492328 |
attttgagtttttcgtcttgcatcacgtttcatagtgtgaaatctataaccattgataacataacctgaaaa |
23492399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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