View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-5 (Length: 868)
Name: NF2664R-Insertion-5
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 522
Target Start/End: Original strand, 42239949 - 42240459
Alignment:
| Q |
9 |
tttttgacgtgtcaatatattgaatacaaaaatcgtaagataaaacgacttttattttaaactttttatcaaatacctaaagactacttattagcatttt |
108 |
Q |
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| T |
42239949 |
tttttgacgtgtcaatgtattgaatacaaaaatcgtaagataaaac---ttttattttaaactttttatcaaatacctaaagactatttgttagcatttc |
42240045 |
T |
|
| Q |
109 |
taattaaaaaattataaattgcataaaatcaaattttatcggatatgcttaggtaacaattgctggaaccagttcgaattttagattcctttcataaaat |
208 |
Q |
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| T |
42240046 |
taattaaaaaataataaattgcataaaatcgaattttatcggatatgcttaggtaacgattactggaaccagttcgaattttagattcctttcataaaat |
42240145 |
T |
|
| Q |
209 |
ctaactgaaccaaacccaatagcatacacaaatattgatactttgtttatttgtataaaatactgaattgatttatttatttttaaatagatgaaataac |
308 |
Q |
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| T |
42240146 |
ctaactgaaccaaacccaatagcatacacaaatattgatactttgtttatttgtataaaatactgaattgatttatttatttttaaatattcgaaataac |
42240245 |
T |
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| Q |
309 |
aataaacattaaaaactcacacatataaatgggggagtcgtggttcaaaccccggtcacaacatttgtcttaacagtttcaacatttttattagttgagt |
408 |
Q |
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| T |
42240246 |
aataaacattaaaaaat-tcacatataagtgggggagtcgaggttcaaaccccggtcacaatatttgtcttaacagtttcaacatttttattagttgagt |
42240344 |
T |
|
| Q |
409 |
taagactcgtagacattacattgatatgttatttgttgannnnnnnnnaataatacttattagttaaatttaatccaacatttttactaattc--atgtt |
506 |
Q |
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| T |
42240345 |
taagactcgtagacattacattgatatgttatttgttga-ttttttttaataatacttattagttaaatttaatccaacatttttgctaattcatatgtt |
42240443 |
T |
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| Q |
507 |
tcaaatataaataatt |
522 |
Q |
| |
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| T |
42240444 |
tcaaatataaataatt |
42240459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 615 - 868
Target Start/End: Original strand, 42240552 - 42240799
Alignment:
| Q |
615 |
cacaaaattgttttgaatatccgaaaaacggtctaaactaaaccgcatacaactggatcagatatgannnnnnnnnnnnnnnaaatcatccaaa-ttaac |
713 |
Q |
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| T |
42240552 |
cacaaaattgttttgaatatccggaaaacggtctaaactaaaccgtatacaactggatcagatataattttttttt------aaatcatccaaacttaac |
42240645 |
T |
|
| Q |
714 |
tgaaccacaagcatttaaattttttgatcagatgactttttgtttcacggccaataaaaaatgcacacaaacattactatgaacgagacaccacttatcg |
813 |
Q |
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| T |
42240646 |
tgaaccacaagcatttaaatttt-tgatcagatgactttttgtttcacggccgataaaaaaggcacacaaacattactatgaacgaaacaccacttatcg |
42240744 |
T |
|
| Q |
814 |
tttgatattttcctaatcacaaacctcaccatttctagttacattaactaatgtt |
868 |
Q |
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| T |
42240745 |
tttgatattttcctaatcacaaacctcaccatttctagttccattaactaatgtt |
42240799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 10600265 - 10600360
Alignment:
| Q |
315 |
cattaaaaactcacacatataaatgggggagtcgtggttcaaaccccggtcacaacatttgtcttaacagtttcaacatttttattagttgagtta |
410 |
Q |
| |
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||||| ||||||||||||| || | | ||| ||| |||| ||||||||||||| | |||| | ||||| ||| ||||||||||||||||||||| |
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| T |
10600265 |
cattagaaactcacacatacaagtagaggaatcggggtttgaaccccggtcacagcgtttggcctaacaattttgacatttttattagttgagtta |
10600360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 30022132 - 30022098
Alignment:
| Q |
385 |
tttcaacatttttattagttgagttaagactcgta |
419 |
Q |
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| T |
30022132 |
tttcaacatatttattagttgagttaagactcgta |
30022098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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