View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2664R-Insertion-6 (Length: 839)
Name: NF2664R-Insertion-6
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-6 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 752; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 8 - 835
Target Start/End: Complemental strand, 3077128 - 3076301
Alignment:
| Q |
8 |
aaaatgaccattttgtcctttttacacttcttcgaaacaaagcatccgataaaattgccatgaaagttttaagctgaacaaaagtacatttttcgtagtc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3077128 |
aaaatgaccattttgtcctttttacacttcttcgaaacaaagcatccgataaaattgccatgaaagttttatgctgaacaaaagtacatttttcgtagtc |
3077029 |
T |
|
| Q |
108 |
cattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattgaattt |
207 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
3077028 |
cattgaaataatgtgatttgatcttgaaaagtcttatgcacaattaccattttgcccttctcttgaaaattttaaagatagaataactgatattgaattt |
3076929 |
T |
|
| Q |
208 |
ttacatatggggtattacaagaggagtgcaaactagctgattacttcaagttctagatatacaaccttaatgttggattatgtggctctcattcaattac |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076928 |
ttacatatggggaattacaagaggagtgaaaactagctgattacttcaagttctagatatacaaccttaatgttggattatgtggctctcattcaattac |
3076829 |
T |
|
| Q |
308 |
ttcatctataagctatttgtagtcaagtccttaattatgaagtttccttttgtgtctttacggctccatatcccttagtggttaaggtttgtcaccaagc |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076828 |
ttcatctatacgctatttgtagtcaagtccttaattgtgaagtttccttttgtgtctttacggctccatatcccttagtggttaaggtttgtcaccaagc |
3076729 |
T |
|
| Q |
408 |
tttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgctacttgcttgtcatgtgctacttttcttcaccattaagaattgtgga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3076728 |
tttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgctacttgcttgtcatgtgctactttgcttcaccattaagaattgtgga |
3076629 |
T |
|
| Q |
508 |
atggaggctatatatacagcaatcacatgtcgtgaatggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtaag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076628 |
atggaggctatatatacagcaatcacatgtcgtgaatggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtaag |
3076529 |
T |
|
| Q |
608 |
aattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcctcatcactataagaggacttgttgtactattttcttt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
3076528 |
aattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcctcatcactataagaagacttgttgtactcttttcttt |
3076429 |
T |
|
| Q |
708 |
tatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttgttatttta |
807 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3076428 |
tatatagtggaactttgctctcaatcgcccgtggttttttacttctcatatttaggagttttccatgtaaatcttgtgtgttatttctcttgttatttta |
3076329 |
T |
|
| Q |
808 |
cttacttctctttaattctcaatttcat |
835 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
3076328 |
cttacttctctttaattctcaatttcat |
3076301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 278 - 839
Target Start/End: Original strand, 29470467 - 29471039
Alignment:
| Q |
278 |
tgttggattatgtggctctcattcaattacttcatctataagctatttgtagtcaagtccttaattat-gaagtttccttttgtgtctttacggctccat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||| |||||||| ||| | |
|
|
| T |
29470467 |
tgttggattatgtggctctcattcaattacttcatctataagctacttgtagtcaagttcttaatttttgaagtttccttttgca-ctttacggttcctt |
29470565 |
T |
|
| Q |
377 |
atcccttagtggttaaggtttgtcaccaagctttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatg-----------ctactt |
465 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
29470566 |
atcctttagtggttaaggtttgtctccaagctttacatgtcacatatgttgcatgcttcacacctcctacttgcttgcatatgttttacacctcctactt |
29470665 |
T |
|
| Q |
466 |
gcttgtcatgtgctacttttcttcaccattaagaattgtggaatggaggctatatatacagcaatcacatgtcgtgaatggacatcacaaaaccaattac |
565 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
|
|
| T |
29470666 |
gcttgccatgtgctactttgcttcaccattaagaattgtggaatggaggctatatatacagcaatcacatgtcgtgaatagatatcacataaccaattac |
29470765 |
T |
|
| Q |
566 |
aaacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatt |
665 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
29470766 |
aaacacactttgtaacatacacttaagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattgagagaaaatattgtcctt |
29470865 |
T |
|
| Q |
666 |
tgtcctcatcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggag |
765 |
Q |
| |
|
||||||||| |||||||||||||||| | |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29470866 |
tgtcctcattactataagaggacttgctatactcttttcttttacatagtggaactttgctcttgatcgcccgtggttttttagttctcatattgaggag |
29470965 |
T |
|
| Q |
766 |
ttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29470966 |
ttttccatgtaaatcttgtgtgttttttctcttgttattttacttacttctctttaattctcaatttcatcgat |
29471039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 429 - 835
Target Start/End: Complemental strand, 3073182 - 3072788
Alignment:
| Q |
429 |
atgcttcacacctcatacttgcttgcatatgctacttgcttgtcatgtgctacttttcttcaccattaagaattgtggaatggaggctatatatacagca |
528 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3073182 |
atgctttacacctcctacttgcttgcatatgctacttgcttgtcatgtgctactttgcttcaccattaagaattgtggaatggaggctatatatacagca |
3073083 |
T |
|
| Q |
529 |
atcacatgtcgtgaatggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagag |
628 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
3073082 |
gtcacatgtcgtgaatggacattacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttcgag |
3072983 |
T |
|
| Q |
629 |
agtattttaggagatattgagagaaaattttgtcatttgtcctcatcactataagaggacttgttgtactattttcttttatatagtggaactttgctct |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3072982 |
agtattttaggagatattgagagaaaattttgtcctttgtcctcatcactataagaggacttgttgtactcttttcttttacatagtggaactttgctct |
3072883 |
T |
|
| Q |
729 |
cgatcgcccgtggttttttacttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctca |
828 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3072882 |
cgatcgcccgtggttttttacttctcatattgaggagttttccacgtaaatcttgtgtgtt------------attttacttacttctctttaattctca |
3072795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 278 - 461
Target Start/End: Complemental strand, 3073361 - 3073178
Alignment:
| Q |
278 |
tgttggattatgtggctctcattcaattacttcatctataagctatttgtagtcaagtccttaattatgaagtttccttttgtgtctttacggctccata |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
3073361 |
tgttggattatgtggctctcattcaattacttcatctataagctacttgtagtcaagtccttaattgtgaagtttccttttgtgtctttacggctcctta |
3073262 |
T |
|
| Q |
378 |
tcccttagtggttaaggtttgtcaccaagctttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgct |
461 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3073261 |
tcccttagtggttaaggtttgtctccaagctttacatgtcatatatgttgcatgcttcacacctcatagttgcttgcatatgct |
3073178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 19804286 - 19804411
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctct--tgaaaattacaaggatagaataacttatat |
200 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||| ||||||||||||| ||||||| | || || |||||| ||| |||| ||||||| ||| |
|
|
| T |
19804286 |
tagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtctgtccctaaaaaaaattccaaagataaaataactgatac |
19804385 |
T |
|
| Q |
201 |
tgaatttttacatatggggtattaca |
226 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
19804386 |
tgaatttttacatgcggggtattaca |
19804411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 278 - 839
Target Start/End: Complemental strand, 8565398 - 8564827
Alignment:
| Q |
278 |
tgttggattatgtggctctcattcaattacttcatctataagctatttgtagtcaagtccttaattatgaagtttccttttgtgtctttacggctccata |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
8565398 |
tgttggattatgtggctctcattcaattacttcatctataagctacttgtagtcaagtccttaattgtgaagtttccttttgtgtctttacggctcctta |
8565299 |
T |
|
| Q |
378 |
tcccttagtggttaaggtttgtcaccaagctttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgct-----------acttg |
466 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
8565298 |
tcccttagtggttaaggtttgtctccaagctttacatgtcacatatgttgcatgcttcacacctcctacttacttgcatatgctttacacctcctacttg |
8565199 |
T |
|
| Q |
467 |
cttgtcatgtgctacttttcttcaccattaagaattgtggaatggaggctatatatacagcaatcacatgtcgtgaatggacatcacaaaaccaattaca |
566 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
8565198 |
cttg-catatgctacttg-cttcaccattaagaattgtggaatggaggctatatatacagcaatcacatgtcgtgaatgatcatgaaaaaaccaattaca |
8565101 |
T |
|
| Q |
567 |
aacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcattt |
666 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||| || || ||| |
|
|
| T |
8565100 |
aacacactttgtaacatacacttgggtgtattttttgtgagaattcttgttccattttagagagtattttaggaaatattgagtgaaaatattatccttt |
8565001 |
T |
|
| Q |
667 |
gtcctcatcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagt |
766 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || || || || |||||||||||||||||||||||||||| |
|
|
| T |
8565000 |
gtcctcatcactataagaggacttgttgtactcttttcttttacatagtggaactttattcgtgaccgtccatggttttttacttctcatattgaggagt |
8564901 |
T |
|
| Q |
767 |
tttccacgtaaatcttgtgtgtt-atttctcttgttattttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8564900 |
tttcaacgtaaatcttgtgtgttaatttctcttgttattttacttacttctctttaattctcaatagcatcgat |
8564827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 1507904 - 1508020
Alignment:
| Q |
110 |
ttgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctct-tgaaaattacaaggatagaataacttatattgaatttt |
208 |
Q |
| |
|
|||||||||| || || |||| ||||||| ||||||||||||| || |||| ||||| || |||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
1507904 |
ttgaaataatatgtttcagtcccgaaaagtcttatgcacaattacca-tttgtccttccctaaaaaaattccaaagataaaataacttatactgaatttt |
1508002 |
T |
|
| Q |
209 |
tacatatggggtattaca |
226 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
1508003 |
tacatgcggggtattaca |
1508020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 5573631 - 5573506
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctct-tgaaaattacaaggatagaataacttatatt |
201 |
Q |
| |
|
|||||| |||||||||| || || ||||||||||| || |||||||||| ||||||| ||||| || |||||| || |||| ||||||| ||||| |
|
|
| T |
5573631 |
tagtccgttgaaataatatgtttcaatcctgaaaagtcttgtgcacaattaccattttgtccttccctaaaaaaattcaaaagataaaataactgatatt |
5573532 |
T |
|
| Q |
202 |
gaatttttacatatggggtattacaa |
227 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
5573531 |
gaacttttacatgcggggtattacaa |
5573506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 4222379 - 4222492
Alignment:
| Q |
110 |
ttgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattgaattttt |
209 |
Q |
| |
|
|||||||||| || || |||| ||||||| |||| |||||||| ||||| | ||||| || |||||| ||| |||| ||||||||||| | ||||||| |
|
|
| T |
4222379 |
ttgaaataatatgtttcagtcccgaaaagtcttattcacaattaccattt-gtccttccctaaaaaattccaaagataaaataacttatactaaattttt |
4222477 |
T |
|
| Q |
210 |
acatatggggtatta |
224 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4222478 |
acatgcggggtatta |
4222492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 839
Target Start/End: Original strand, 23043804 - 23043838
Alignment:
| Q |
805 |
ttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23043804 |
ttacttacttctctttaattctcaattgcatcgat |
23043838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 805 - 839
Target Start/End: Original strand, 23048159 - 23048193
Alignment:
| Q |
805 |
ttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23048159 |
ttacttacttctctttaattctcaattgcatcgat |
23048193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 278 - 839
Target Start/End: Complemental strand, 15242098 - 15241521
Alignment:
| Q |
278 |
tgttggattatgtggctctcattcaattacttcatctataagctatttgtagtcaagtccttaattatgaagtttccttttgtgtctttacggctccata |
377 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| | | || |||| |||||| ||||||| |||||| |||||||||||| || |
|
|
| T |
15242098 |
tgttggattatgtggttctcattcaattccttcatctataagctacatttggttaagtaattaattgggaagttttcttttgca-ctttacggctcctta |
15242000 |
T |
|
| Q |
378 |
tcccttagtggttaaggtttgtcaccaagctttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgct-----------acttg |
466 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
15241999 |
ttccttagtggttaaggattgtctccaagcttgacatgccacatatgttgcatgcttcacacctcctacttgcttgcatatgctttacacctcctacttg |
15241900 |
T |
|
| Q |
467 |
cttgtcatgtgctacttttcttcaccattaagaattgtggaatggaggctatatata------cagcaatcacatgtcgtgaatgga-catcacaaaac- |
558 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||| || || || |||||||||||| | ||||||| || |
|
|
| T |
15241899 |
cttgccatgtgctactttgcttcaccattaagaattgaggaatgaaggctatatatatatacacaacattctcatgtcgtgaatatatcatcacatcaca |
15241800 |
T |
|
| Q |
559 |
-caattacaaacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaatt |
657 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15241799 |
acaatta-aaacacactttgtaacatacacttgagtgtattttttgtgagaattcttgttccattttagagagtattttaggagatattaagagaaaata |
15241701 |
T |
|
| Q |
658 |
ttgtcatttgtcctcatcactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcata |
757 |
Q |
| |
|
||||| ||||||||||| |||| ||||||| || ||||||| |||||||||| ||||||||||||||||| || | ||| |||||||| ||||||||| |
|
|
| T |
15241700 |
ttgtcctttgtcctcattactacaagaggatttattgtacttttttcttttacatagtggaactttgctcgtgaccacccatggttttt--cttctcata |
15241603 |
T |
|
| Q |
758 |
ttgaggagttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15241602 |
ttgaggagttttccacgtaaatcttgtgtgttatttctcttattattttacttacttctctttgattctcaattgcatcgat |
15241521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 5559644 - 5559768
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattg |
202 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||||| || ||| ||| ||||||| ||||||||| || || ||| |||| ||||||| ||| || |
|
|
| T |
5559644 |
tagtccgttgaaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactg |
5559743 |
T |
|
| Q |
203 |
aatttttacatatggggtattacaa |
227 |
Q |
| |
|
||||||||||| ||| |||||||| |
|
|
| T |
5559744 |
aatttttacatgcgggttattacaa |
5559768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 34149779 - 34149682
Alignment:
| Q |
114 |
aataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattgaatttttac |
211 |
Q |
| |
|
|||||| ||||| | ||||||||| | ||||||||||||| |||| | | ||||| | |||||| ||| |||||||||||| || |||||||||||| |
|
|
| T |
34149779 |
aataatatgattcgatcctgaaaattcttatgcacaattaccattgtacatttctcataaaaattccaaagatagaataactaatgttgaatttttac |
34149682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 278 - 839
Target Start/End: Original strand, 15113685 - 15114223
Alignment:
| Q |
278 |
tgttggattatgtggctctcattcaattacttcatctataagctatttgtagtcaagtccttaattatgaagtttccttttgtgtctttacggctccata |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| || || |
|
|
| T |
15113685 |
tgttggattatgtggctctcattcaattccttcatctataagctatttgtggtcaagtccttaatcgtgaagtttccttttgca-ctttacggcacctta |
15113783 |
T |
|
| Q |
378 |
tcccttagtggttaaggtttgtcaccaagctttacatgtcacatatgttgcatgcttcacacctcatacttgcttgcatatgctacttgcttgtcatgtg |
477 |
Q |
| |
|
| |||||||||||||| || | ||| | | ||||| |||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
15113784 |
tttcttagtggttaaggactgcctacaaccatgacatgccacatatgttgcatgcttcacacctcc------------------acttgcttgccatgtg |
15113865 |
T |
|
| Q |
478 |
ctacttttcttcaccattaagaattgtggaatggaggctatatata--cagcaatcacatgtcgtgaatggacatcacaaaaccaattacaaac-acact |
574 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||| | | || |||||| ||||| |||| ||||| |
|
|
| T |
15113866 |
ctgttttgcttcaccattaagaattgacgaatgaaggctatatatatacagcaatcatatgtcgtggagacatatatcaaaac-aattaaaaaccacact |
15113964 |
T |
|
| Q |
575 |
ttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcatttgtcctcat |
674 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
15113965 |
ttgtaacatacacttgagtgtacttttggtgagaattcttgttccatttgagagagtattttaggagatattgggagaaaatattgtcctttgtcctcat |
15114064 |
T |
|
| Q |
675 |
cactataagaggacttgttgtactattttcttttatatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttttccacg |
774 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15114065 |
tactataagaggacttgttgtactcttttcttttacatagtggaactttgctcgtgatcgcccgtggttttttacttctcatattgag------tccacg |
15114158 |
T |
|
| Q |
775 |
taaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcatcgat |
839 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15114159 |
taaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatagcatcgat |
15114223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 41530279 - 41530402
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattg |
202 |
Q |
| |
|
|||||| ||| |||||| ||||| |||||||||||||||| || ||| ||| ||||||| ||||||||| || || ||| |||| ||||| | ||| || |
|
|
| T |
41530279 |
tagtccgttggaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataattgatactg |
41530378 |
T |
|
| Q |
203 |
aatttttacatatggggtattaca |
226 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
41530379 |
aatttttacatgcgggttattaca |
41530402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 37366776 - 37366666
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattg |
202 |
Q |
| |
|
|||||| ||| |||||| ||||| | |||||||||||||| || ||||||| ||||||| | ||||||| || || ||| |||| ||||||| ||| || |
|
|
| T |
37366776 |
tagtccgttggaataatatgattcgatcctgaaaagttttgtgaacaattaccattttgtctttctcttaaattttccaatgataaaataactgatactg |
37366677 |
T |
|
| Q |
203 |
aatttttacat |
213 |
Q |
| |
|
|||| |||||| |
|
|
| T |
37366676 |
aattcttacat |
37366666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 22212383 - 22212508
Alignment:
| Q |
105 |
gtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctctt---gaaaattacaaggatagaataacttatatt |
201 |
Q |
| |
|
|||| ||| |||||| || || ||||||||||||| |||||||||||| ||||||| |||||||||| |||||| ||| |||| || |||||||| | |
|
|
| T |
22212383 |
gtccgttggaataatatgtttcggtcctgaaaagtcttatgcacaattttcattttacccttctcttaaaaaaaattccaaagataaaagaacttatact |
22212482 |
T |
|
| Q |
202 |
gaatttttacatatggggtattacaa |
227 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
22212483 |
aaatttttacatgtggggtattacaa |
22212508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 2694317 - 2694204
Alignment:
| Q |
114 |
aataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattgaatttttacat |
213 |
Q |
| |
|
|||||| ||||| |||||||||||||||| || ||||||| ||||||| ||||||||| || || ||| |||| ||||||| || ||||||||||||| |
|
|
| T |
2694317 |
aataatatgattcggtcctgaaaagttttgtgaacaattaccattttgtccttctcttaaattttccaatgataaaataactgatgctgaatttttacat |
2694218 |
T |
|
| Q |
214 |
atggggtattacaa |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2694217 |
gcggggtattacaa |
2694204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 5248246 - 5248150
Alignment:
| Q |
114 |
aataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattgaattttta |
210 |
Q |
| |
|
|||||| ||||||||||||| | ||| ||||||||||||| |||| ||||||| |||| |||||| ||| ||| |||||||| ||| |||||||||| |
|
|
| T |
5248246 |
aataatatgatttggtcctgcacagtcttatgcacaattaccattatgcccttttcttaaaaattccaatgattgaataactgatactgaattttta |
5248150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 28146770 - 28146834
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttc |
167 |
Q |
| |
|
|||||| |||||||||| || || |||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
28146770 |
tagtccgttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccttc |
28146834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 19357550 - 19357427
Alignment:
| Q |
103 |
tagtccattgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaattacaaggatagaataacttatattg |
202 |
Q |
| |
|
|||||| ||| |||||| ||||| |||||||||||||||| || ||| ||| ||||||| ||||||||| || || ||| |||| ||||||| ||| || |
|
|
| T |
19357550 |
tagtccgttggaataatatgattcggtcctgaaaagttttgtgaacagttaccattttgtccttctcttaaattttccaatgataaaataactgatactg |
19357451 |
T |
|
| Q |
203 |
aatttttacatatggggtattaca |
226 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
19357450 |
aatttttacatgcgggttattaca |
19357427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 14529122 - 14529020
Alignment:
| Q |
128 |
gtcctgaaaagttttatgcacaattatcattttgcccttctct---tgaaaattacaaggatagaataacttatattgaa-tttttacatatggggtatt |
223 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||||| || |||||| ||| |||| ||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
14529122 |
gtcctgaaaagtcttatgcacaattaccattttgtccttccctaaaaaaaaattccaaagataaaataactgatattgaattttttacatgcggggtatt |
14529023 |
T |
|
| Q |
224 |
aca |
226 |
Q |
| |
|
||| |
|
|
| T |
14529022 |
aca |
14529020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 12405 - 12287
Alignment:
| Q |
110 |
ttgaaataatgtgatttggtcctgaaaagttttatgcacaattatcattttgcccttctcttgaaaa--ttacaaggatagaataacttatattgaattt |
207 |
Q |
| |
|
|||||||||| || || |||||||||||| ||||||||||||| ||||||| || || | |||| || ||| |||| ||||||| ||| ||||||| |
|
|
| T |
12405 |
ttgaaataatatgtttcagtcctgaaaagtcttatgcacaattaccattttgtccgtcccaaaaaaaaattccaaagataaaataactgatactgaattt |
12306 |
T |
|
| Q |
208 |
ttacatatggggtattaca |
226 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
12305 |
ttacatacggggtattaca |
12287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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