View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2664R-Insertion-8 (Length: 385)
Name: NF2664R-Insertion-8
Description: NF2664R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2664R-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 224 - 380
Target Start/End: Complemental strand, 2013988 - 2013834
Alignment:
| Q |
224 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
323 |
Q |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
324 |
tctgatcatttatttttcttcaaattattatcagtgtataagtatcagtgtcgtgtc |
380 |
Q |
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| T |
2013888 |
tctgatcatt--ttttttttcaaattattatctgtgtataagtatcagtgtcgtgtc |
2013834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 2014200 - 2014054
Alignment:
| Q |
8 |
agtagcaaatctctatattatttgcctaataatttaaagcgaaaaattggagaagggaaattattatgtaa-----taaagtgaaactaatgaccgttta |
102 |
Q |
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| T |
2014200 |
agtagaaaatctctatattatttgcctaataatttaaagcgaaaaattggagaagggaaattattatgtaataaattaaagtgaaactaatgaccgttta |
2014101 |
T |
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| Q |
103 |
cgattgtgttgaacttcatctgataattataaaaaagacgttgcaga |
149 |
Q |
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| T |
2014100 |
cgactgtgttgaacttcatctgataattataaaaaagacattgcaga |
2014054 |
T |
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