View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2664_high_11 (Length: 294)

Name: NF2664_high_11
Description: NF2664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2664_high_11
NF2664_high_11
[»] chr3 (6 HSPs)
chr3 (16-232)||(1091356-1091573)
chr3 (16-201)||(1050612-1050792)
chr3 (33-223)||(1077493-1077677)
chr3 (44-157)||(1107789-1107902)
chr3 (252-280)||(1077468-1077496)
chr3 (252-280)||(1091308-1091336)
[»] chr5 (2 HSPs)
chr5 (71-162)||(28433362-28433453)
chr5 (74-160)||(28420128-28420214)
[»] chr8 (4 HSPs)
chr8 (40-160)||(23361434-23361554)
chr8 (48-162)||(23555846-23555960)
chr8 (57-108)||(4130252-4130303)
chr8 (59-157)||(4120173-4120271)
[»] scaffold0090 (1 HSPs)
scaffold0090 (39-160)||(8039-8160)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 1091573 - 1091356
Alignment:
Q  16 attatggttgttacttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggag 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||     
T  1091573 attatggttgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagtaataatacaccaaagctaaatacatcagattttgtagaa 1091474  T
Q  116 aatagtccatcaatggcgtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattattt-ttttcttcaaataacttca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1091473 aatagtccatcaatggcgtattctggagccatataaccactgaaaagtgtacacatgagttaattatatttgaattattttttttcttcaaataacttca 1091374  T
Q  215 aaatatcaaggattcttc 232  Q
    ||||||||||||||||||    
T  1091373 aaatatcaaggattcttc 1091356  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 1050792 - 1050612
Alignment:
Q  16 attatggttgttacttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggag 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1050792 attatggttgttgcttggaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggag 1050693  T
Q  116 aatagtccatcaatggcgtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattatttttttct 201  Q
    || || ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||     |||||||||||||||||||    
T  1050692 aaaagcccatcaatggcatattctggagccatataaccactgaaaagtgtataaatgagtta-----atttgaattatttttttct 1050612  T

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Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 1077677 - 1077493
Alignment:
Q  33 gaaatgtaagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggc 132  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1077677 gaaatgtaagtcctttatttttatgtccacttacaatctctagcaataatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggc 1077578  T
Q  133 gtattctggagccatataaccactgaaaagtgtacatatgagttaattatatttgaattatttttttcttcaaataacttcaaaatatcaa 223  Q
     |||||||||||||||||||||||||||||| |||| ||||||||     |||||||||| |||||||||  |||||||| ||||||||||    
T  1077577 atattctggagccatataaccactgaaaagtttacaaatgagtta-----atttgaatta-ttttttctttcaataacttaaaaatatcaa 1077493  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 1107902 - 1107789
Alignment:
Q  44 cctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggag 143  Q
    ||||||||||||  |||||||||||||||||||| |||||  ||||||||||||||||| |||||| |||||||||  ||||||||||| || || ||||    
T  1107902 cctttatttttccttccacttacaatctctagcagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcgggag 1107803  T
Q  144 ccatataaccactg 157  Q
    ||||||||||||||    
T  1107802 ccatataaccactg 1107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 1077496 - 1077468
Alignment:
Q  252 tcaatgaaactacttactgtgttccaact 280  Q
    |||||||||||||||||||||||||||||    
T  1077496 tcaatgaaactacttactgtgttccaact 1077468  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 1091336 - 1091308
Alignment:
Q  252 tcaatgaaactacttactgtgttccaact 280  Q
    |||||||||||||||||||||||||||||    
T  1091336 tcaatgaaactacttactgtgttccaact 1091308  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 28433453 - 28433362
Alignment:
Q  71 tctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactgaaaag 162  Q
    |||||||||||||||||||||||||||||||| ||||||   ||||||| ||||| |||  | |||||||| ||||||||||| ||||||||    
T  28433453 tctagcaataatacaccaaagctaaatacatctgattttacagagaataatccatgaatcacatattctggtgccatataaccgctgaaaag 28433362  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 28420214 - 28420128
Alignment:
Q  74 agcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactgaaa 160  Q
    ||||||||||| ||||||||||||||||| |||||  | ||||| ||||||| |||  | ||||| || ||||||||||| ||||||    
T  28420214 agcaataatacgccaaagctaaatacatctgatttaatagagaaaagtccatgaatcacatattcgggtgccatataaccgctgaaa 28420128  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 23361554 - 23361434
Alignment:
Q  40 aagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattct 139  Q
    ||||||||||||| ||| |||| ||| ||||||||  ||||| |  ||||||||| |||||||||||||  |||||||||  ||||| || || |||||     
T  23361554 aagtcctttatttctctttccatttataatctctaataataaaattccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattca 23361455  T
Q  140 ggagccatataaccactgaaa 160  Q
    || ||||||||||||||||||    
T  23361454 ggtgccatataaccactgaaa 23361434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 23555960 - 23555846
Alignment:
Q  48 tatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccat 147  Q
    |||||||| ||||||||| ||  || || | |||||| ||||| ||||||||||| |||||  | ||||||| |||||| ||||| ||||| || |||||    
T  23555960 tatttttcagtccacttataagttcgaggactaatacgccaaaactaaatacatctgatttaatagagaataatccatcgatggcatattcaggtgccat 23555861  T
Q  148 ataaccactgaaaag 162  Q
    |||||||||||||||    
T  23555860 ataaccactgaaaag 23555846  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 4130252 - 4130303
Alignment:
Q  57 gtccacttacaatctctagcaataatacaccaaagctaaatacatcagattt 108  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||| |||||    
T  4130252 gtccgcttacaatctctagcaataaaacaccaaagctatatacatctgattt 4130303  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 4120173 - 4120271
Alignment:
Q  59 ccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattctggagccatataaccactg 157  Q
    ||||| ||||||||||||||||| || ||||||||| ||||||| |||||    ||||| || || || || || |||||||| | |||||||||||||    
T  4120173 ccactgacaatctctagcaataaaaccccaaagctatatacatctgatttctcagagaaaagcccctccattgcatattctggcggcatataaccactg 4120271  T

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Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 8039 - 8160
Alignment:
Q  39 taagtcctttatttttctgtccacttacaatctctagcaataatacaccaaagctaaatacatcagattttgtggagaatagtccatcaatggcgtattc 138  Q
    ||||| || ||||||||| |||||| | ||| ||||  |||||||| ||||||||||||||||| |||||  | || |||| ||||||| |||| |||||    
T  8039 taagtgctctatttttctttccactgataatttctaataataatacgccaaagctaaatacatctgatttgatagaaaataatccatcagtggcatattc 8138  T
Q  139 tggagccatataaccactgaaa 160  Q
     || |||||||| || ||||||    
T  8139 aggtgccatatagccgctgaaa 8160  T

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